Mser013440.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004602.1:9894368-9903533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.059 4.1 8.5 8.2 1 23 16 39 16 40 0.95 2 16 0.00075 0.052 14.5 1.1 1 23 42 65 42 65 0.97 3 16 0.00018 0.012 16.4 2.0 1 23 70 92 70 92 0.97 4 16 0.00013 0.0089 16.9 0.2 1 23 101 123 101 123 0.98 5 16 0.00057 0.04 14.9 0.1 1 23 130 152 130 152 0.96 6 16 4.4e-07 3.1e-05 24.7 0.2 1 23 158 180 158 180 0.98 7 16 0.027 1.9 9.6 3.4 1 22 727 748 727 751 0.91 8 16 0.0038 0.27 12.3 2.2 3 23 759 780 758 780 0.92 9 16 0.0002 0.014 16.3 0.5 1 23 785 807 785 807 0.96 10 16 0.27 19 6.5 0.1 1 23 813 836 813 836 0.95 11 16 0.0016 0.11 13.4 7.0 2 23 842 863 841 864 0.95 12 16 0.0004 0.028 15.4 0.1 1 23 873 895 873 895 0.97 13 16 4e-05 0.0028 18.5 0.2 1 23 901 923 901 923 0.97 14 16 1.4e-05 0.00097 19.9 0.5 1 23 929 951 929 951 0.99 15 16 5.4e-05 0.0038 18.1 1.4 3 23 959 979 957 979 0.96 16 16 4e-07 2.8e-05 24.8 1.6 1 23 985 1007 985 1007 0.98
Sequence Information
- Coding Sequence
- ATGGCAGTTAACGATGAGTGTTTATTAGTAGAAAATGTGAATAATCATCGTTGTAAACAGTGCAACGCCGTTTTTAAATACTATAATGACCTAAGAAATCATCGTAATCACACGCATCATGGATATAAGTGCGATAAATGTGATAAAGGTTATCACCAACAAAACAGATTAGAAGAACATATTGCAAGAGCACACACAGGTGTACGGCATGTATGTGAAACTTGCAATAACTCGTTTGCTAGGCTCGCTTACCTTAGACAACACCAACGTAACCATAatccaaattttgttaaaaagactTACCCTTGCCAACTATGCGATAAGATATTATCAACAGCCAGATATTTAAGAATACATTTACTAACACACCAAGGTGGAATTTTAAATCACATATGTGACATTTGTGGAAAGGGTCTTGCAACAGTAGTTAGTTTAGAGAGACATATTAAAGCTCACAACAACGATAAACAATTTGTTTGTACTATTTGTGGTAAAGCTTTTGTAGCTAAAAGTTACTTAGCAAGTCATATGCGATCACATAGcaAAGTGTATGCCTACGAAAAGGGAAGGTTACGACTGTTAATGCAAGAATGTTCTGCAGAAGATGAATATGAAGAAATAGAACAATTTAGCGACGACGAAAATAGTTTGGATGAAACAGACAATCTTGAGGAAAGAAGTAACAGTGAATCTGAACAAGAACTTGATGACTTAGAAGATGTACTAAATTTAGAAGATGAACAGAATGGAGACACTGTTTATAGAGGCAAAGATGGGACACTTTGGAAAAGAGTGCCAccttgtaataaacaaattaggaTCAAGAAAGAAAATATAGAGCAATTACAGGGACCTAAAAAGGCCACTCGGAATTTAAAGACACAAGTAGAAATTTGGAACTATTTTATAAATGACAACATTTTGTCAATTATTGTAGAAAACACAAATAAGTATATAGAGTCTTTGACTGGCGGTTACGCTCGAAAGAGCGATATTAAACCTACAACTATAAATGAAATTCGCGCTTTGATTGGACTTCTATATATTTCCGGAACATATAAAGCAGATCACTTGACTTTGGAAGATCTGTGGGCAAGCAATGGCAAAGGTATCGAAATATTTCGACTTACAATGTCAATAAAACGTTTCAAAACTCTTTTAAGGTGTTTGCGATTTGACAATAAAAACGATCGCGAAGAAAGAacaaaattagacaaattaGCACCGATTCGACAATTTTTTCATCTATTTGTTTCCAATTGTAAAAATGGATACAGCCTCTCCCAATTTGCTACTATTGATGAAAAAGTAGAACCCTTCAGAGGCAAGTGTTCTTTTCGGCAGTACATACCAAGTAAACCGAACAAATACggcattaaaatatttgctttatgTGATGCTTTAATGCATTATACTGCCAATCTAGAAGTGTATGTTGGACGTCAACCAGAAGGtccattttttgttagtaattcaCCAAAAGATGTTGTTGAGAGACTGGTTCAACCGATAAAGAATTCTGGTAGAAACGTTACCCTAGATAGTTGGTTTATGAGTTTTCCTTTGATTGATCATTTACTAACAAATTATAGACTAACTACAGTAGGAACTTTGACAAAGAATAAAAGAGAACTGCCTCCGGAATTCGTGCAAGGAAATCGTTCTGTAAGGTTCagtttatttgcttttaaagaTAATTGCACTCTTGTGTCGTATTgctcaaaaaagaaaaaagttgttcTGTTAGCTTCAAGTATGCACAATGACGATGCTATAGATCCAGAAAgtaaacatttacaaaaaccTGAAATACTGACAACATATAATCATACAAAGGGAGGAGTAGACGTCGTCGACAAACTCTGCTCAAGTTATAACTGTGCTAGAACCACAAGGAGATGGCCGAtggtaattttttacttttgtctAAATGTTGCAGGAATTAACTCTCAAGTTATTTACAATGCAAATAATTTTGACGACGACAAGAAAATGGTACGACGAAAATTTTTGCAAGAACTGGGATTCTCCTTACTGCAAAATCATTTGCGTGAGAGAGCAACAATTAAAACTATACCGTCAAGAAGTTTGAAACTACGTTTGATGGAAATGTTCAGTCAATCCGAAACTGTAAACGCagatgaaacaaaatttttagaaaaagAAAAAGCGAATAACTATCAATGTAAAAAGtgcaacatattttttcaagagTATAGACAGCTTAGAAATCATCGGAATCAACAAACACATAAACAACACCCCAAAAATCTTTGTAATTTATGTGACCAAAAATTTGATACTAAACTCCATCTTAAACGTCATAAAATAGAAATTCACGGAGTATGGCCATTTTCTTGCGAAATTTGTAATCAGGGCTTTTCATCTCGCCCTTCTTTGAAAGCACACAATTCCAAGCATACCCGCAATTATAGATTTAATTGCGCTCAATGTGACAATGGTTACTATTATAAACCATTATTAGCAGAACATATTGCAAGAGTACACAGGGGGCAACGAACCAAATGTGAAACTTGCCATAAATTGTTTGCTAGCCTCAGTTATCTTAGGAAACACAAACGCCGCCACCACGAtcctaattatgttaaaaagaCGTATCCTTGCGGAATATGCAATAAGATACTAAACAAACCCGATTCTTTGAGAATACATTTGAAAGCTCATGATGGAATTCTTAACCACGTTTGTGACATTTGTGGAAAGGCTCTTTCTAGTTCAGTGATGTTGAAGACGCATATTAAAGCTCATAACAATGATAAACAATATGTTTGTTATATTTGCGGTAACGCTTTTGTAAAGAAACAGTATTTAGTAAGTCATATGCGCACACATACTAAAGAAAAACCTCAGCATTGCacgttttgtaataaaagttatGCTCAAAGGAGTGCGTTAGTTATTCATATGAGAGGCCACACTGGAGAAAAACCTTACACGtgtaaaatttgtgaaaaatcaTTTGTTAGTAACAGTTTATTAAAATCTCATATGACTAGACATTAG
- Protein Sequence
- MAVNDECLLVENVNNHRCKQCNAVFKYYNDLRNHRNHTHHGYKCDKCDKGYHQQNRLEEHIARAHTGVRHVCETCNNSFARLAYLRQHQRNHNPNFVKKTYPCQLCDKILSTARYLRIHLLTHQGGILNHICDICGKGLATVVSLERHIKAHNNDKQFVCTICGKAFVAKSYLASHMRSHSKVYAYEKGRLRLLMQECSAEDEYEEIEQFSDDENSLDETDNLEERSNSESEQELDDLEDVLNLEDEQNGDTVYRGKDGTLWKRVPPCNKQIRIKKENIEQLQGPKKATRNLKTQVEIWNYFINDNILSIIVENTNKYIESLTGGYARKSDIKPTTINEIRALIGLLYISGTYKADHLTLEDLWASNGKGIEIFRLTMSIKRFKTLLRCLRFDNKNDREERTKLDKLAPIRQFFHLFVSNCKNGYSLSQFATIDEKVEPFRGKCSFRQYIPSKPNKYGIKIFALCDALMHYTANLEVYVGRQPEGPFFVSNSPKDVVERLVQPIKNSGRNVTLDSWFMSFPLIDHLLTNYRLTTVGTLTKNKRELPPEFVQGNRSVRFSLFAFKDNCTLVSYCSKKKKVVLLASSMHNDDAIDPESKHLQKPEILTTYNHTKGGVDVVDKLCSSYNCARTTRRWPMVIFYFCLNVAGINSQVIYNANNFDDDKKMVRRKFLQELGFSLLQNHLRERATIKTIPSRSLKLRLMEMFSQSETVNADETKFLEKEKANNYQCKKCNIFFQEYRQLRNHRNQQTHKQHPKNLCNLCDQKFDTKLHLKRHKIEIHGVWPFSCEICNQGFSSRPSLKAHNSKHTRNYRFNCAQCDNGYYYKPLLAEHIARVHRGQRTKCETCHKLFASLSYLRKHKRRHHDPNYVKKTYPCGICNKILNKPDSLRIHLKAHDGILNHVCDICGKALSSSVMLKTHIKAHNNDKQYVCYICGNAFVKKQYLVSHMRTHTKEKPQHCTFCNKSYAQRSALVIHMRGHTGEKPYTCKICEKSFVSNSLLKSHMTRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -