Mser018828.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malthinus seriepunctatus
Gene Symbol
-
Assembly
GCA_963924605.1
Location
OZ004603.1:33454015-33457617[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.6e-06 0.00053 20.8 0.5 1 23 154 176 154 176 0.99
2 16 8.6e-06 0.0006 20.6 2.3 1 23 182 204 182 204 0.98
3 16 9.5e-07 6.6e-05 23.6 1.6 1 23 210 232 210 232 0.99
4 16 8.3e-07 5.8e-05 23.8 2.1 1 23 238 260 238 260 0.97
5 16 2.7e-06 0.00019 22.2 1.8 1 23 266 288 266 288 0.97
6 16 7.3e-05 0.0051 17.7 2.5 3 23 296 316 294 316 0.97
7 16 6.1e-06 0.00042 21.1 2.4 1 23 322 344 322 344 0.96
8 16 0.00019 0.014 16.3 9.7 1 23 350 372 350 372 0.97
9 16 9.7e-06 0.00068 20.4 1.5 1 23 486 508 486 508 0.98
10 16 5.3e-06 0.00037 21.3 0.9 1 23 514 536 514 536 0.98
11 16 3.3e-07 2.3e-05 25.1 1.3 1 23 542 564 542 564 0.99
12 16 2.3e-06 0.00016 22.4 1.5 1 23 570 592 570 592 0.97
13 16 0.004 0.28 12.2 4.5 1 23 598 620 598 620 0.97
14 16 3.9e-06 0.00027 21.7 0.5 3 23 628 648 626 648 0.97
15 16 1.7e-06 0.00012 22.8 1.7 1 23 654 676 654 676 0.96
16 16 0.00039 0.027 15.4 9.7 1 23 682 704 682 704 0.97

Sequence Information

Coding Sequence
atgaatttatctTTGAATATAAATTCATTTAATTCGATTTGCAGAACTTGTTTAGGTAGTGACTCTCTTTGCTCAATTTATGAATCGAATATAAAATATTCTATGAAATACTCAGAAATGCTTTCTGATTGTACTTTGCTTGTGACTAATAAAGAAGATAAATTGCCTTTGAGTATATGTAAAAAATGCAAACGAAATTTACtagctttttataaatttaaatgtaacgtACAGAACACAAATGCGTTACTACAAAAAATTCTGAATGAAACTGAAGAAGATATTAGTACAGTTTTTGATGAGCCGCTTTCAATAGACGCTGATGAAAGTTTACCTATTCTAAAAGAAACCgaactgaaacaaaaatacaCTCCAATACTTGGACTCGCTCAAGAACTTAGTGTAGTAGTTAAAAGTGACAAAAAGAAAGTTccaaaagtaaaattacaagAGAAGTCATATCAATGTGATTCTTGTGGTACAATTTTAAGTCGTCGTAGTAGTTTGATACAACACATTAGAAagcacacaggtgaaaaaccatatgaATGTGATGTGTGTAAAAAGAAATTTGCTAGAACCGAACATTTAACAATACATAAACGTATTCATACAGGCGAACGTCCTTATTCTTGCCCAATATGTGAAAAAAGATTTATTCAACACGCTACTTTAACATCTCACTTACGAACTCATAGTGGTGAAAAACCTCACATGTGCGCTATGTGTGGCAAATCATTTAGCCAGTCAGTTACTCTTAAATATCACATTCGTACTCACACCGGTGAAACTCCATTTGATTGTaaactttgtaataaaaagtttGCCTATTccggtaatttaaaaattcatatgaGATTTCATAATAAGGAAAGGCCATTTGGGTGTGATTTGTGTGACAAACGTTTCGTTACAAGTTCTCATTTAGCGGTACATGTTAAACATCATACAGGTGATCGTCCTCATAAATGCAACGTATGCGATAAGGCATTTGCACGAAGCGAACACCTTAAAGATCACCGTGTTATACATACAGGACAAAAACCACATTgttgtaaaatttgtttaaaacgaTATACACAAAGTAGTCACTTAAGTCGACATATGAAAACgcataaaaATATTAGTACAGGTCTCGATGAGTCACATTCAACTGATGCTTATGAAAGTTTACCTATTTTAAAAGAAACCGAAGTGAAACAAGAATACACTCCAATACTTGAACGAGAACTTAGTGTAATAGTTAAAGGTCACAAAAGAAAGTCTACTGAAGAAGACATTAGTACAGTTCTAGATGAGTCACTTTTAACCGACGCTGATGAAAGTTTACCTATTCTAAAAGAAACCGAAGTGAAACAAGAATACACACCAATACTTGAACTCGAACAAGAACTTAGTGTAATAGTTAAAGGCGACAATAAAAAAATCCCAAAAGTAAAATTAGAAAAGAAGTTACATCAGTGTGATTCTTGTGGTACAATTTTAAGTAGTCGTAGTAATTTGATTAAACACATAAGAAagcacacaggtgaaaagccattTGAATGTGATGTGTGTAAAAAGACATTTGGTAGAAAGGAACAGTTATCGATACATAAACGTATTCATACAGGTGAACGTCCTTATTCTTGCACAAAATGTGATAAAAGTTTTGTTCAACTTGCTACTTTAACATCTCACTTACGAactcatactggtgaaaaacctcACATGTGCTCTATGTGTGGTAAATCATTTAGCCAGTTGGCTACTCTTAAATATCACATTCGCGCTCACTCTGGTGAAACTCCATTTGATTGTAAACTTTGTGATAAAAAGTTTGCCTGTTCCTGGTATTTAAAAACTCATATGAGATTTCATAATAAGGAGAGGCCGTTTGGGTGTAATTTGTGTGACAAACGTTTTGTTACAAATTCTAATTTAGCGGAACATATTAAACAACATACAGGTGATCGTCCGCATAAATGTAACGTGTGCGATAAGACATTTGCGCGAAGCGAGAACCTTAAATTACACCGTGTTatacatacaggagaaaagccacATTGTtgtcaaatttgtttaaaacgaTATACACAAAGGAGTCACTTAAGTAGACACATGAAAACGcataaaagttaa
Protein Sequence
MNLSLNINSFNSICRTCLGSDSLCSIYESNIKYSMKYSEMLSDCTLLVTNKEDKLPLSICKKCKRNLLAFYKFKCNVQNTNALLQKILNETEEDISTVFDEPLSIDADESLPILKETELKQKYTPILGLAQELSVVVKSDKKKVPKVKLQEKSYQCDSCGTILSRRSSLIQHIRKHTGEKPYECDVCKKKFARTEHLTIHKRIHTGERPYSCPICEKRFIQHATLTSHLRTHSGEKPHMCAMCGKSFSQSVTLKYHIRTHTGETPFDCKLCNKKFAYSGNLKIHMRFHNKERPFGCDLCDKRFVTSSHLAVHVKHHTGDRPHKCNVCDKAFARSEHLKDHRVIHTGQKPHCCKICLKRYTQSSHLSRHMKTHKNISTGLDESHSTDAYESLPILKETEVKQEYTPILERELSVIVKGHKRKSTEEDISTVLDESLLTDADESLPILKETEVKQEYTPILELEQELSVIVKGDNKKIPKVKLEKKLHQCDSCGTILSSRSNLIKHIRKHTGEKPFECDVCKKTFGRKEQLSIHKRIHTGERPYSCTKCDKSFVQLATLTSHLRTHTGEKPHMCSMCGKSFSQLATLKYHIRAHSGETPFDCKLCDKKFACSWYLKTHMRFHNKERPFGCNLCDKRFVTNSNLAEHIKQHTGDRPHKCNVCDKTFARSENLKLHRVIHTGEKPHCCQICLKRYTQRSHLSRHMKTHKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-