Mser013416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malthinus seriepunctatus
Gene Symbol
-
Assembly
GCA_963924605.1
Location
OZ004602.1:9814214-9818610[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0045 0.32 12.0 4.1 2 23 17 39 17 39 0.96
2 25 0.0029 0.21 12.6 1.6 2 23 45 67 44 67 0.92
3 25 6.3e-05 0.0044 17.9 0.3 1 20 75 94 75 96 0.93
4 25 0.0044 0.31 12.1 6.4 1 23 113 135 113 135 0.95
5 25 0.0022 0.15 13.0 0.4 1 23 144 166 144 166 0.98
6 25 0.00012 0.0081 17.0 0.1 1 23 172 194 172 194 0.96
7 25 2.5e-06 0.00017 22.3 2.0 2 23 201 222 200 222 0.96
8 25 0.00016 0.011 16.6 3.5 1 23 228 250 228 250 0.98
9 25 0.11 7.7 7.7 0.6 1 13 256 268 256 269 0.92
10 25 6.1 4.3e+02 2.2 7.2 1 23 309 332 309 332 0.95
11 25 0.002 0.14 13.2 0.8 2 23 338 360 337 360 0.94
12 25 0.00015 0.01 16.7 1.2 1 23 368 390 368 390 0.98
13 25 0.0059 0.42 11.7 1.6 1 23 396 419 396 419 0.96
14 25 0.00013 0.0092 16.9 0.3 1 23 424 446 424 446 0.97
15 25 0.43 30 5.8 0.5 1 13 455 467 455 468 0.90
16 25 0.0028 0.2 12.7 3.1 1 23 490 513 490 513 0.97
17 25 0.0014 0.098 13.6 2.5 2 23 519 541 518 541 0.94
18 25 0.00061 0.043 14.8 1.2 1 23 549 571 549 571 0.97
19 25 0.032 2.2 9.4 1.0 1 23 577 600 577 600 0.95
20 25 1.6e-05 0.0011 19.7 2.5 1 23 605 627 605 627 0.98
21 25 3.6e-05 0.0025 18.6 1.8 1 23 636 658 636 658 0.98
22 25 1e-06 7e-05 23.5 0.3 1 23 664 686 664 686 0.97
23 25 5.1e-06 0.00036 21.3 3.5 2 23 693 714 692 714 0.96
24 25 4.5e-06 0.00031 21.5 4.1 1 23 720 742 720 742 0.99
25 25 1.9e-06 0.00014 22.6 2.5 1 23 748 770 748 770 0.98

Sequence Information

Coding Sequence
ATGGAAGATAACGATCAGTCTTTATTAGTAGAAAAACTGAATGATCCTCAGTGTAGAAAGTGTtggcttttttttaaaacacctaAGCAACTTAGCCGTCATTGGCGGCACACACATAAAAGCCCTAAAATGACTTGTGATTTGTGtgataaaaagtttaattttcaatatcaaGTTAGAAATCATAAAATTCAAAGTCACAAAGTAAATACGCCACGTCCTTTTGATTGTGACGTTTGTGACAAGAGTTATACAACTAAGCAAGGTTTGAAAACGCACCAAACAATACTGAATGGCTTATTAGCACATATTGCAAGTATACATACCGGGGTACGATTTTTATGTGAAATTTGTCATAAATCGTATCAAAACATCCATTATCTCAATAAACACAAACGCAAACACAAtcctaattatgtaaaaaaaacttacacTTGCGAAATATGCAATCATGTAGTAGAAAACGCCATATCTATAAAAAAGCATATGGAAAAACACAATGGAATTCGTAGCCACATTTGTGATATTTGTGGAAAGGGTCTTACAAGTGTAGGGAATTTGAAAACGCATATTCAAGCTCATAATAACGATAAACAGTGTGTTTGTGATATTTGCGGTAAAGCTTTtgtacataaaaaatatttatctgtTCATATGCGCGCACATACTAAGGAAAAACCGTACAAGTGCGCAACGTGTGAGAAATGTTTCACTCATAGGGGTACGTTAGTTCTCCATGTGAGAGGACACACTGGAGAAAAACCTTATAAATGTCAAATTTGTGAAAAGCCGTTTATTAGTAAGAGAATCATCCACCCACAAGAACGGAGGCTTATGTCGGACTTATATTGGAATAGAATAATCGAAATTGAGTATGTTGGAATATCAGGTGCCGATGTGTCTTTATTGGAAATAGCAAATAATCATCATTGTACAAAGtgcaacatattttttaaaggaaGCAAAGAACACCGCAATCATTGGAGAAGCGCACATAGACAACGACAACAGCCTTGTGATTTgtgtgacaaaaaatttcgttttaaatATGAAGTTGAAAGTCATAAAATAAGAATGCACAGTGGCAGTCGGCCACGTCCTTTTTCCTGTGAAGTTTGTAACAAGAGTTATACATCTGTGTATGTATTAAAATTACACCAAAAGAGCCATGCcggtaatttcaaatttaagtgTGATCACTGTGATAAAGGTTATCACATGAAAAGAGACATAGAGCAACATATTGCTGTAGTGCATGCAGGGGTACGATACAACTGTGAAATTTGTCCAAAATCGTATGCTACCCTGCAGTACCTTGAGCTACACAAACGCGATCATGATCCTATAAATGTTAAAAAGACTTACTCTTGTGAAAGATGCAACAAGTCATATAACACTGCTAGAATCGAAATAGAGTATGTTGGAATATCAAGTGCCAATGTGTCTTTATTGGAAATAGCAAATAATCATCAGTGCACAAAGTGCaacgtttattttaaagaaagtaAAGAACTCCTTAATCATTGGAGAAGCACACATAGACAACGACAACAGTCTTGTGATTTGTGtgacaaaaaattttgttataaatatgaAGTTGAACGTCATAAAATAAGAATTCACAGTGGCATTCGGCCACGTCCTTTTTTCTGTGAAATTTGTAACAAGAGTTATACATCtgcaactattttaaaattacaccaaAAGAGCCATACCGgtagttttaaatataaatgtgATCACTGTGAGAAAGGTTATCACATGAGAAGAGACATAGAGGAACATATTGCTGTAGTGCATGCAGGGGTACGATACCAATGTGATATTTGCCCAAAATCGTATACTACCCTGCATTACCTTCAGCTACACAAACGCGATCATGATCCTAACTATGTTAAAAAGAAATACTCTTGTGAAAGATGCAACAAGTCATATAACACTGCTAGATCGTTAAGACAACATTTGGAAAAACACGAAGGAATTCTTAACCACATTTGTGACATTTGTGGAAAGGGTTTTACAAGTGCAGTTAGTCTGAGGACGCATATTAAAGTTCATAATAATGATAAACAATGTATTTGTGATACTTGCGGTAAAGCGTTtgttcataaaaaatatttaattactcaCATACGCACACATACTAAAGAAAAACCTTATGAGTGCAcgatttgtaaaaaatgtttcacTCAAAGGACTTCGTTAGTAACTCATACGAGAATCCACAGTGGAGAAAAGCCTTATAAATGTCATATTTGTGAAAAGGCATTTGTTAGCAACAGTTTGTTAAAATCTCACTTGACAAAACATTAG
Protein Sequence
MEDNDQSLLVEKLNDPQCRKCWLFFKTPKQLSRHWRHTHKSPKMTCDLCDKKFNFQYQVRNHKIQSHKVNTPRPFDCDVCDKSYTTKQGLKTHQTILNGLLAHIASIHTGVRFLCEICHKSYQNIHYLNKHKRKHNPNYVKKTYTCEICNHVVENAISIKKHMEKHNGIRSHICDICGKGLTSVGNLKTHIQAHNNDKQCVCDICGKAFVHKKYLSVHMRAHTKEKPYKCATCEKCFTHRGTLVLHVRGHTGEKPYKCQICEKPFISKRIIHPQERRLMSDLYWNRIIEIEYVGISGADVSLLEIANNHHCTKCNIFFKGSKEHRNHWRSAHRQRQQPCDLCDKKFRFKYEVESHKIRMHSGSRPRPFSCEVCNKSYTSVYVLKLHQKSHAGNFKFKCDHCDKGYHMKRDIEQHIAVVHAGVRYNCEICPKSYATLQYLELHKRDHDPINVKKTYSCERCNKSYNTARIEIEYVGISSANVSLLEIANNHQCTKCNVYFKESKELLNHWRSTHRQRQQSCDLCDKKFCYKYEVERHKIRIHSGIRPRPFFCEICNKSYTSATILKLHQKSHTGSFKYKCDHCEKGYHMRRDIEEHIAVVHAGVRYQCDICPKSYTTLHYLQLHKRDHDPNYVKKKYSCERCNKSYNTARSLRQHLEKHEGILNHICDICGKGFTSAVSLRTHIKVHNNDKQCICDTCGKAFVHKKYLITHIRTHTKEKPYECTICKKCFTQRTSLVTHTRIHSGEKPYKCHICEKAFVSNSLLKSHLTKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-