Mfla000996.1
Basic Information
- Insect
- Malthinus flaveolus
- Gene Symbol
- -
- Assembly
- GCA_950108345.1
- Location
- OX467285.1:14279425-14283653[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 1.8e+02 3.1 0.2 2 23 208 229 207 229 0.85 2 13 3.3e-06 0.00022 21.7 0.6 2 23 238 260 237 260 0.96 3 13 2.7e-06 0.00019 21.9 0.6 1 23 366 388 366 388 0.98 4 13 0.0029 0.2 12.4 1.6 1 21 392 412 392 413 0.94 5 13 0.011 0.77 10.5 1.7 2 23 421 443 420 443 0.95 6 13 0.1 7 7.5 4.2 1 19 447 465 447 468 0.93 7 13 0.0023 0.16 12.7 2.2 1 23 476 498 476 498 0.97 8 13 0.027 1.8 9.4 0.2 1 23 511 533 511 533 0.94 9 13 0.00033 0.022 15.4 1.2 1 23 538 561 538 561 0.97 10 13 7.9e-05 0.0054 17.3 0.4 2 23 570 591 569 591 0.94 11 13 0.00037 0.025 15.2 0.6 1 23 597 620 597 620 0.97 12 13 0.0046 0.32 11.8 0.8 2 23 623 644 622 644 0.96 13 13 0.00019 0.013 16.1 2.1 1 23 649 672 649 672 0.96
Sequence Information
- Coding Sequence
- atgAATTTGAATGATAACTGCCTAAATATTAATCCAGaATCCTGTGGGATTTGTGGTAATGATCATAGCTATTCCAAATGTGACAAAATAGAAATCAAACAATACATTCGAGACGCTATTATACCATCTAAAGCTCGCTTAACATTGCCAGCATGTTTCAGCTTAGTTACGATGGCAGATGGAACTTGGTGTATAATCGCAAACACGTTTATAGGTAAAGGAACAATATTTGGACCTTTACAAGCTCAAATATTGCTTACCATGAATCCCAATACTCAGCTtcccttaaaattatttaattgtaacgTAGAAGATATGTCGGAATATTATTTAGATACTTGCGACGAAAATAACTGTAACTGGATGATTTTTGTTGGTACCGCACAGAATCAAGAAGAACAGAACTTACTTTGCTTTCAAgacaagtcaaaaatattttatttagctAATAGAGATATATCAGAAGGAGAACATATGAAACTGTGGTACTCTCCACATTATGCAAAATTGATGGGTGCAACTATATTGCCTCCCTTTATTGAGCAGGATTCTCCCGAACAATACATCGATATTAAagagattttgaaaaaacaacaaaacattGTAGAACGCGACAATTGGACTTGTAAATTCTGTGGCAAATTGGAGACCGATGTGACATTATTTGCGTCTCATATGATAGAGCATTACACTAATCGTGTTGCCAAAAAAGTGTGCGATATATGTAAAGAGTCCTTTAGCAATAAAATTCTCTTGAGGAAACATCAGCGAATAGTTCATAATGCAGTGTTTGCAACAAGTAAGAAACCGAAACCGACTGTTATaattcaagaaaatattgcaaaCAAGAACACGGTTGGAGATCCTTTACTTAATAATCTCACACTAATGGTTACAAACGACAGTTTTGATAATAGTAATTTGGTGCTACCAAACTTGGAACTTAATCAATATGTAAATTTATCTAATAATGTGGCAAATCACAGTGCACTATTGGAAAGCGATAATTTGAGTTTGAACgttgaaaatatattaataggaaatgttaaagaattagaccattttaattttgaaataggaGAGAGTCTAGAGCAATTTGTGTGCGATATATGTCTAAAATCATTTTCTAAGgccatcaatttaaaaatgcatatgaAGAGTCATACTGGAAGGTTTACTTGTCGTAACTGCTTAAGGatctTTGCGCGACAAGAGAATTTAAATTCTCACGTCTGTAAGGAGTCCAAATCGATTAAATCGAGATGTCCTATTTGTAAACGTGGTTTTATGTTGAGAAAATATATGCATCGTCACTTAAGAGCTGCTCATCAAAAACGATTCTCGTGTGAACACTGTGGTAACAGTTATTATTCGTCGAAAGAGTTTCAAGATCACAATTGTTCTATGGCTGCAAATAGAGAAACGTTTATGTGTTTAGTGTGTGACAAAACTTTCATGAACgacaaaagttacaaaaaacattccaaaattcatttacaaaaagaaattgaaactGGCGATCGTACTTCTTATATTTGTGAAATTTGTGCACAAGAATTTACCACGACTCAAGGCTTAAAGTTGCATAGTTTCGTTCATATGAAACGTAAATTCGAATGTGATGCTTgtgacaaaaagttttttagaagaGACGTGCTCAAAACTCACCAGGAAACTCAACATAGTAATAGTAATCTGAACAAGctaTCTTGTCAAGTTTGCAACAAGGAATTTAAAACTAAGCGTTCGCTAGCGGCTCATACTGTAGTACACACTGGAGTAAAATCTTATTCCTGCGATATATGTTTTAAGCCATTTTACTTGGCGGCTAGTCTTCGTAAACACAAAGAAACAATGCATTTGAATAAATGCAACTTgtgtaaacaaatatttgaatcGGAAAGTTTGTTGGAATTGCATAAAAAAGACCACGCAATTGGATATTTTGAGTGCCCCTTATgcaataagtttttaaaattgagaagCTCTTTACGTCGTCATTTAAAACAGTTTCATTCGGAGAAGAATGTGGAAGAAGTTATGATGCAAGTAAAATCGAAAGAAATTTCTTTCAACGAGAACTTAAAAATAGAGTATAGTAACGAAAATTTTCCTGACGAAGATGCTATTGGAAATGACGATAGTGGCATTAATAACGAAATCAAtgcaaatttagaaaattgtaatttagaaaatatagtTAATAATTTCGACGATATAATGAACGATTACGATTGCAACGATACTGAATATTTACTATCAGATAAGTGCATGAGTATGGAAAAGACAAACACAAGTGTGGAACGAATTTTAGACTTTAACGATCTCGAAATCGACTTTCCTAATAATATCGACGTACCAAACACAAGCGAAAATCGCGAAGTTTGTCTATCTATGCCAGATTTAACCGAAACTGATCAGGAAATTACATTAGGTGCAAATGCTTACATGTTAGAAGATGGCACAATTGTCGAGCAAAAGGATCAAGGAAATGTTCTCGTTTATGTTTTAGGTAAAAGTGGCTTTACTTAA
- Protein Sequence
- MNLNDNCLNINPESCGICGNDHSYSKCDKIEIKQYIRDAIIPSKARLTLPACFSLVTMADGTWCIIANTFIGKGTIFGPLQAQILLTMNPNTQLPLKLFNCNVEDMSEYYLDTCDENNCNWMIFVGTAQNQEEQNLLCFQDKSKIFYLANRDISEGEHMKLWYSPHYAKLMGATILPPFIEQDSPEQYIDIKEILKKQQNIVERDNWTCKFCGKLETDVTLFASHMIEHYTNRVAKKVCDICKESFSNKILLRKHQRIVHNAVFATSKKPKPTVIIQENIANKNTVGDPLLNNLTLMVTNDSFDNSNLVLPNLELNQYVNLSNNVANHSALLESDNLSLNVENILIGNVKELDHFNFEIGESLEQFVCDICLKSFSKAINLKMHMKSHTGRFTCRNCLRIFARQENLNSHVCKESKSIKSRCPICKRGFMLRKYMHRHLRAAHQKRFSCEHCGNSYYSSKEFQDHNCSMAANRETFMCLVCDKTFMNDKSYKKHSKIHLQKEIETGDRTSYICEICAQEFTTTQGLKLHSFVHMKRKFECDACDKKFFRRDVLKTHQETQHSNSNLNKLSCQVCNKEFKTKRSLAAHTVVHTGVKSYSCDICFKPFYLAASLRKHKETMHLNKCNLCKQIFESESLLELHKKDHAIGYFECPLCNKFLKLRSSLRRHLKQFHSEKNVEEVMMQVKSKEISFNENLKIEYSNENFPDEDAIGNDDSGINNEINANLENCNLENIVNNFDDIMNDYDCNDTEYLLSDKCMSMEKTNTSVERILDFNDLEIDFPNNIDVPNTSENREVCLSMPDLTETDQEITLGANAYMLEDGTIVEQKDQGNVLVYVLGKSGFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00951221;
- 90% Identity
- -
- 80% Identity
- -