Mfla013472.1
Basic Information
- Insect
- Malthinus flaveolus
- Gene Symbol
- -
- Assembly
- GCA_950108345.1
- Location
- OX467288.1:6136055-6138296[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.55 37 5.2 1.1 3 23 195 216 193 216 0.90 2 12 2.2e-05 0.0015 19.0 1.5 2 23 247 268 246 268 0.96 3 12 4.2e-05 0.0028 18.2 3.4 1 23 274 296 274 296 0.97 4 12 0.00024 0.017 15.8 5.5 1 23 302 325 302 325 0.98 5 12 7.4e-05 0.005 17.4 0.6 3 23 384 404 383 404 0.99 6 12 0.00023 0.016 15.9 1.8 1 23 410 432 410 432 0.99 7 12 2.7e-06 0.00018 22.0 1.4 1 23 438 460 438 460 0.97 8 12 6.6e-06 0.00045 20.7 2.1 2 23 466 487 466 487 0.97 9 12 3.6e-05 0.0024 18.4 0.7 1 23 493 515 493 515 0.94 10 12 6.7e-08 4.6e-06 27.0 1.7 1 23 521 543 521 543 0.98 11 12 8e-05 0.0055 17.3 5.5 1 23 549 571 549 571 0.98 12 12 0.14 9.5 7.1 2.4 1 23 582 605 582 605 0.93
Sequence Information
- Coding Sequence
- atgaataattatgACTATTTAAACGTTCAAAAAGTATGCAGGGCATGTTTAAATGAAGAAAACGAAATGAAAACcatgattttattaaaaaatgacacCAAAGAAGTGGGTTTACTTGAAATGTTTGTCTCAATCGTCAGTACTGAGGTAAATACATCCGATGCAACGTCTTCAAATTTATGTAATGCATGCGAAGAAACACTAAAGTTGTCTTACAACTTCCAACAACAGTGTcgaaaatcaaatcaaattttagagGTTTATGCGAAAAAAAGAACCAACGATAGTTTTTCCACACGAAAAGATGACGAGACTGAAAGTGCGGATGCTTACAAGATGGTAGACGAAACGAGTAATGATTGCCATCCTGAACAACTcccaattaaaaaagaagCAGTTGACGATAATTCGAGGGAAGCGCCAGAAGAAACCACTTATAGTGAGCCGGAGAACAGTGAAAAGGTGGAAACAAACAGTAAATTGGGtggtataaaacaaaacttacgTTTAAAACAGTTTCCACCTCGTGAAGTTGAAGCAGCGATCAAAGCTACCAGGGCCAACTTTTACACAAACGTCGAGTGTATCAAGTGCGGCTTTGTTGGTACGCATTCGAGGGCGCTCTCAATCCACATGTCACACTTACACAAgGAAGTCAAAGAACGTTGGTGCATCGAATGTAATGAAGAGTTTGATAATTATGCAGAACACGAAAGAAATCATAAAAAGAACCACttaaaatgccaattttgtgGTAAAGATTTTAATTCGAGGGGGCACTTGTTGGAACATTTGAGGGCACACTCTGTTGTTAGGCCTTTTATTTGCGATGTTTGTACAAAATGTTTTGTGTCGCAACGTCACTTGGCTGTTCACTTTCGTATTCATTCCCAAGAGGCTCCATACAAGTGTAAATTTTGCGTTGCGTCGTTTAAGCAACAATCTTTGCTTAGAAATCATCACAAGAGGCGACACAAGGACATAAGTTTAAACTGCGAGCTGAAGGAGGATAAAATAGAGTTgtgGGAGccacaaaatttttgtggCGTATGTAACGCGAATGTTTTGAGCTTGCAGGCACACAATAAGCAAGTGCATGGTGAGAACTTACCAAAGGAGTGTACCGATGCAAATTTGAACAAAGAATTATGTACGGTTTGTGGGAAACAGTTCAAtaatATAGCAAAATATAGAATGCATATGAgaatacacactggtgaaactCCTTATAAATGTTctttttgtaacaaaagaaTTAATACTCGAAATCAGCTAGTTGTTCATGAGCGAacacacactggtgaaaagcctcATATTTGTCATGTTTGtggaaaaggTTTTGCACAATCTAGTGTATTAAATACGCATTTAAGAATACACACAGGGCGTCCAGAAGTTTGTCAAATATGCCAGCAAAGGTTTTGTAGACCAGCTGAGTTGAGACTCCACATGAGGAAGCACACAGGTGAAAAACCATTCTTATGTACCGAGTGTGGGCAAGCCTTTGTTCAAAGAAGTCACCTTGTGGAACACAACAAAATTCACAGCGACATACGACCTTATCAGTGCACTTACTGCGAtaaagcttttaaacaaaactctTCTTTAAAGTCCCACATTTATATACACCTTGgaAATAAGCCATTCAAGTGTAACCAATGTACTTATTCGTGTCGACAAAGTTATAGTCTCACACAGCACATGAAGGGTCACACCAATGATACTCCAAGACCAGATCAGCCACACGTGTGCtcaatttgttgtaaaacaTTCTCAACTGTAGCTGTACTAACGTCCCATGTAAGTAATACACATGGAATTGTAACGAGCTGA
- Protein Sequence
- MNNYDYLNVQKVCRACLNEENEMKTMILLKNDTKEVGLLEMFVSIVSTEVNTSDATSSNLCNACEETLKLSYNFQQQCRKSNQILEVYAKKRTNDSFSTRKDDETESADAYKMVDETSNDCHPEQLPIKKEAVDDNSREAPEETTYSEPENSEKVETNSKLGGIKQNLRLKQFPPREVEAAIKATRANFYTNVECIKCGFVGTHSRALSIHMSHLHKEVKERWCIECNEEFDNYAEHERNHKKNHLKCQFCGKDFNSRGHLLEHLRAHSVVRPFICDVCTKCFVSQRHLAVHFRIHSQEAPYKCKFCVASFKQQSLLRNHHKRRHKDISLNCELKEDKIELWEPQNFCGVCNANVLSLQAHNKQVHGENLPKECTDANLNKELCTVCGKQFNNIAKYRMHMRIHTGETPYKCSFCNKRINTRNQLVVHERTHTGEKPHICHVCGKGFAQSSVLNTHLRIHTGRPEVCQICQQRFCRPAELRLHMRKHTGEKPFLCTECGQAFVQRSHLVEHNKIHSDIRPYQCTYCDKAFKQNSSLKSHIYIHLGNKPFKCNQCTYSCRQSYSLTQHMKGHTNDTPRPDQPHVCSICCKTFSTVAVLTSHVSNTHGIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -