Mfla015653.1
Basic Information
- Insect
- Malthinus flaveolus
- Gene Symbol
- -
- Assembly
- GCA_950108345.1
- Location
- OX467289.1:859771-861962[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 0.73 10.6 0.8 2 23 79 100 78 100 0.97 2 18 2.9 2e+02 2.9 1.7 1 23 106 128 106 128 0.95 3 18 0.00074 0.05 14.3 0.4 1 23 134 156 134 156 0.98 4 18 0.12 8.3 7.3 0.7 1 23 242 263 242 263 0.96 5 18 0.0016 0.11 13.2 2.0 1 23 269 291 269 291 0.98 6 18 0.0012 0.078 13.7 0.6 1 23 297 319 297 319 0.97 7 18 0.00048 0.033 14.9 4.0 1 23 325 347 325 347 0.97 8 18 8.5e-07 5.8e-05 23.5 2.8 1 23 353 375 353 375 0.98 9 18 0.00097 0.066 13.9 2.2 1 23 388 410 388 410 0.96 10 18 0.0047 0.32 11.7 1.0 1 23 416 438 416 438 0.97 11 18 7.4e-06 0.00051 20.6 3.0 1 23 444 466 444 466 0.98 12 18 0.0013 0.091 13.5 1.1 3 23 474 494 472 494 0.97 13 18 1.8e-06 0.00012 22.5 3.3 1 23 500 522 500 522 0.99 14 18 0.35 24 5.8 6.8 1 23 542 564 542 564 0.97 15 18 0.00017 0.012 16.3 1.6 1 23 570 592 570 592 0.99 16 18 4.4e-05 0.003 18.1 3.9 1 23 602 624 602 624 0.99 17 18 0.00016 0.011 16.3 5.4 1 23 630 652 630 652 0.98 18 18 0.0043 0.29 11.9 5.8 1 23 658 680 658 680 0.98
Sequence Information
- Coding Sequence
- ATGAGTTATGATACAACTGAACAACCCCTCGATTACAAAGATGAAGTTAAAATGACGGTCGTTACAGATAATTTGGATTGGAAAGGAAGTGCTTTCGATTTAGGTATAGTCATTAAAGAGGAAGAAAAGTGGATCGTCGATGAAACTGGCAACTTTGGTATCGGAGCAAAAAAGTGTGCACCACCCGTTGAGGAAACGACAGACAAAAACAAGCAAGTGCACGACAGTTTTAAAGTGTGCCCTACTTGTGGGTTTACGTGTCCAAATGATAACGTGTTGAAAGTTCACGTTAAAACTCACACTGCCTTGAGGTTTTATCAATGCGATTTTTGCGAATATAATACTTTGTTCAAGATGGAATACTATAACCACATATTAACGCACCCTAATGAGAAGAAGTTCGAATGCGACGTATGCGGTTACAAAAGtacaacaaaattattcttggAAGCGCACTTGTTGAAACACAAAAACGTACCTGATGTAAATGCTCAGTTGAAGGAGTACTATAAACGAAAAGAGTCATGTCAATATTACTATGGCCCCACGATGTGTGACCTGTCCGATTATGAGTATGTATACAAAACAAAGCTAGAAAATCAAAATCTCGATCTAACCGTTTGTGATGTTGAAATAGAACCCTTTAGTGATGGTAAAAAAGAACCAGTTAGTGATGTTAAAAATGAACCCGTTAAGAAGTCGAAGACGgtgctaataaaaaaatttatttgcgaaATATGTGGTCAGTTGGTgatgaaaaagaattttcttaaCCATTACCGTATGCATACTGGTGAGAAACCGTTTTCTTGTGAACTTTGTGATTATAAGACAACCGCTAAGAAACATCTGGCACTACATATGCTGAGAcatactggtgaaaaacctcaTAAATGTGCAATATGTTCTGCCGCATTTATAActactacaaaattaaagcgtCACGTTGAAATTCATACCGGTGTTAAGAGATTTAGTTGTCATATTTGTAATCGaagattttatcaaaaagtggGACTAGTGTCGCACTTATTACATCACAGTGGAGAACAGCCATTTAATTGTAATATCTGTAATAGGCGTTTTACTACCCAGGGTAGCTTAAGAAATCACACGAAAACACACACAAAACAAAAGTCCAAAGTCCCACGGGAGAAGCGTTACTTGTGTGAAATATGTGGTGCTAAGTGCGAAAGTAACTACTTCCTAAAGCTCCATCGCCGTACACATAGTGACGAACGACCATTTCCTTGCAAACTTTGCGAGTATAAGgccaaaactaaattaaatcttGAAAAGCACTCGCTAACACattcgaaagaaaaaaaatttaaatgcaaaatttgtTCGCTCTCGTTTTCAATGGCTTCGAATTTACATCGCCATCTCAAACTTCATACAGGCATTAAAAGATTCGGTTGCTCTATCTGTAATGCTAGGTTTCACCAAAAAGTGTCACTAACCTCACATTTATTAGTTCACACTGgagaaaaaccatttaaatgcAAAGTTTGCGATTACTCTTTTAGAACCAAAAAGGTGTTATCAAATCACATGAAGACACATGAGGGGGGACGAGAACAAGCAATTCGCAGGAAGATACAACATGTTGGggaaaagcaatttaaatgcGACGTCTGCGATTACAAATGTTACACGAAAAGTCGCTTAATGTGCCATATGGTACGACATACCGGTTTAAAACCATTCAAATGTGACTTGTGCGATTACAGCTCTGCATATTATGGTAATCTAAAAATGCATAGGAGAAAACACAGCTCTTCACCTACACtcgtcaaaaaatttaaatgcgaaAAGTGCGATTTTAAATGTGCGTATAAAGCAAACATGAATCGTCACATGCGAGTCCACACCGGCGAAAAACCGCACCAATGCAGAATATGTTGGGCTAGATTTACCCAATCACACACTTTAAAAAGTCACATGAATAAACACACTGGGAAAAAGCCGTTCTATTGTGAATTGTGCGATTATAAATGTAcgaaaaaacaatatttagaaaaacatCGGTTGAAGCATTCTTCTGGTAAGGAGTAA
- Protein Sequence
- MSYDTTEQPLDYKDEVKMTVVTDNLDWKGSAFDLGIVIKEEEKWIVDETGNFGIGAKKCAPPVEETTDKNKQVHDSFKVCPTCGFTCPNDNVLKVHVKTHTALRFYQCDFCEYNTLFKMEYYNHILTHPNEKKFECDVCGYKSTTKLFLEAHLLKHKNVPDVNAQLKEYYKRKESCQYYYGPTMCDLSDYEYVYKTKLENQNLDLTVCDVEIEPFSDGKKEPVSDVKNEPVKKSKTVLIKKFICEICGQLVMKKNFLNHYRMHTGEKPFSCELCDYKTTAKKHLALHMLRHTGEKPHKCAICSAAFITTTKLKRHVEIHTGVKRFSCHICNRRFYQKVGLVSHLLHHSGEQPFNCNICNRRFTTQGSLRNHTKTHTKQKSKVPREKRYLCEICGAKCESNYFLKLHRRTHSDERPFPCKLCEYKAKTKLNLEKHSLTHSKEKKFKCKICSLSFSMASNLHRHLKLHTGIKRFGCSICNARFHQKVSLTSHLLVHTGEKPFKCKVCDYSFRTKKVLSNHMKTHEGGREQAIRRKIQHVGEKQFKCDVCDYKCYTKSRLMCHMVRHTGLKPFKCDLCDYSSAYYGNLKMHRRKHSSSPTLVKKFKCEKCDFKCAYKANMNRHMRVHTGEKPHQCRICWARFTQSHTLKSHMNKHTGKKPFYCELCDYKCTKKQYLEKHRLKHSSGKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -