Mfla001649.1
Basic Information
- Insect
- Malthinus flaveolus
- Gene Symbol
- -
- Assembly
- GCA_950108345.1
- Location
- OX467285.1:23552948-23554378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5e-05 0.0031 18.1 2.8 1 23 131 153 131 153 0.98 2 11 8.9e-08 6.1e-06 26.6 1.9 1 23 159 181 159 181 0.98 3 11 0.0002 0.013 16.1 3.4 1 23 187 209 187 209 0.98 4 11 2e-06 0.00013 22.4 0.1 1 23 215 237 215 237 0.99 5 11 1.7e-06 0.00012 22.6 0.7 1 23 243 265 243 265 0.99 6 11 1.2e-08 8.5e-07 29.3 0.2 1 23 271 294 271 294 0.98 7 11 0.0003 0.021 15.5 2.2 1 23 300 322 300 322 0.94 8 11 0.00032 0.022 15.4 0.9 1 23 331 353 331 353 0.98 9 11 8.2e-06 0.00056 20.4 3.8 1 23 359 381 359 381 0.99 10 11 6.3e-07 4.3e-05 23.9 1.0 1 23 387 409 387 409 0.97 11 11 3.4e-06 0.00023 21.6 2.1 1 23 415 437 415 437 0.98
Sequence Information
- Coding Sequence
- ATGCAAGAAtttgaaaacataaaaattgaagaaatatGCCGTGTTTGTATATGTCGGAAAAAAGTAATGAGACCATTATTCGAAGGAACTGTAGCTAGTATGTTACAAGAAATAACCGCACTCGAagtttccGAAAACGACGGCTTACCGAATTTGCTATGTGATATTTGTATTAGAGAAATCAGTCGCTACTATACTTTTAGACAGAGAGTAATAACTAACGATTCTACAttgaaaagtataattttcgaACGTAAccaatgtaaatttgaaagcaGCGATGGCGAAGATCAAAGCGAAGAACTGTCTAACATTAAACCTAAACAGGAAATTATAGAAAGAActgttaaaatagaaaaaccacTAGAAGTTCGAAATTCCGATAACCAATTTACTTGTGATTTGTGTAAGAAAATCGTTAAAACAATACATTCACTAAAACGTCACATGAAAATTCACTCTGGTGAAAAGCCTCACAAATGTAATATATGCAACAAATCTTTCGTAGAAAATGCTAATTTGATCAAACACATAAGAAAGCATAATAACGATAAGAAACATCAATGCAACGAATGTGGCCTTCGATTTTATGAAAGAAACAAGCTAACAATACATTTTAGAacacacactggtgaaaagccttacAGTTGTGAAATATGCACTCGCCCATTTGCAACACCAGCACAAGTACAAGTACACATGAAGacTCATACGAGGGAGAAACCGTATGTGTGCGATATCTGCAATAAATCATTCCCATATCGGGGTTCTTTGGATACACACAAAAGAACCCACACGggtgaaaaattatttgtatgtCCCGAATGTAACAAaccgttttctcaaaaagtgaacTTAATTAGTCACATTCGAACGCAACATACGCACGAATACCCATTTATGTGTAGCGAATGTGGAAAAGCCTATCCAactagagaaaaattaaatagtcaTTGTAGACAACATAGTGGGGAAGTAAGACCTCGGAAATATCATTGCATGGTGTGTGAAAAACAGTTTGGCACAAGTGCAGAATTACGTATCCATAATCGCATACATACAAATGAACGGCCGTATCAGTGTGATTTTTGCGgaaaaaattttcgagtttcGTCACATATGACTTCTCATCGAAAAATTCATACTGGCGAAAAAAAACATTCTTGTGGATATTGTGGGAAAGCCTTTAGAGAATcgtcaactttaaaaatacacgTTCGGATTCATACCGGAGAAAAACCTTACTGTTGCCAAATATGTGGAAGTAGTTTTACACAGAGCAATACTTTGAACATTCATATGAAAGTTCATAGCAACGAAAGAGGTTGA
- Protein Sequence
- MQEFENIKIEEICRVCICRKKVMRPLFEGTVASMLQEITALEVSENDGLPNLLCDICIREISRYYTFRQRVITNDSTLKSIIFERNQCKFESSDGEDQSEELSNIKPKQEIIERTVKIEKPLEVRNSDNQFTCDLCKKIVKTIHSLKRHMKIHSGEKPHKCNICNKSFVENANLIKHIRKHNNDKKHQCNECGLRFYERNKLTIHFRTHTGEKPYSCEICTRPFATPAQVQVHMKTHTREKPYVCDICNKSFPYRGSLDTHKRTHTGEKLFVCPECNKPFSQKVNLISHIRTQHTHEYPFMCSECGKAYPTREKLNSHCRQHSGEVRPRKYHCMVCEKQFGTSAELRIHNRIHTNERPYQCDFCGKNFRVSSHMTSHRKIHTGEKKHSCGYCGKAFRESSTLKIHVRIHTGEKPYCCQICGSSFTQSNTLNIHMKVHSNERG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00951129;
- 90% Identity
- iTF_00951129;
- 80% Identity
- -