Basic Information

Gene Symbol
Trerf1
Assembly
GCA_950108345.1
Location
OX467285.1:70643354-70675297[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-09 3.5e-06 27.2 0.0 2 43 1181 1222 1180 1225 0.95

Sequence Information

Coding Sequence
ATGGTTAGATTATCCAAAGAGTTGAAACGGTTGAAAACTGCAAACTGCGGGAAATTGTGTGATAGGGCAAGTAAACGAATTGAAACTCATAACGTAGAAGTGGAACAGGTTGCGTATGGCAAAATCAATTATGCGGACGAAAGAGGGAGTAAATGTATAATAAGAGCAACGGAAGGAGTAACAGCAACTTTTGACCTATTCGATTCTTCGAGTGGTCCAGATTTAACGTTATCTCCCCAAACGTTTACGAATTCTGCAGAGGCCTTTATCAACGATAACTCAAATAGTTTAGGGGTTCCTACGGAAAACGAGGCAGtaACAACGACAACAGAAGATAAAAAACCTCAAGTAGGATCCTCGAGTGAAATAGTAAAATTGGCTGTAAAAAGGCCTCGACCGAAGGCTGCTTCTCCCAACAGACAAGGTCCACAGCAGTGTCAGGTTTGTGCCAAAGTCTTTGGAAACGCTTCTGCTCTTGCTAAACACAAGCTGACTCATAGTGACGAACGAAAATACGTGTGTACTATGTGCGGAAAAGCATTTAAAAGACAGGATCATCTAAATGGACACATGCTAACCCACCGCAACAAGAAACCTTACGAGTGCAAGGCTGAAGGTTGCGGAAAATCTTACTGTGATGCAAGATCTTTAAGGAGACATACCGAAAATCACCATAGTTCTTCCACTGTCAGTACAAACACAACAACTATGTCTCCAGCTCAAGGAGCGGCAACCGGCGATGCCGCCTCTCCCCACGGTTCAAGTTGTATACAATACGCTCCACCTCCCACTTCAACTTCGTCAGGAAAAAGTCAATTGCAACAATTATTAGCTACAGAGCCTGTAAAGagtAACGGAAGCAACAACGATGGATTAACAAAACAACAATTGGATTTAATACATCAAATAATGGAACAAACGCAGAGACAATCGCACACTGTGAATAAACCTGCAACAAAACCAGTATCAAAACCTCACAGTAAAACatcgaataaaattcaaaaagtttggaCTTCTacgACTCAGCAAACTGCGACCAACAAAACAAGTTTAAGCACATCGACGCCCCAAACCAAAGTAACAACTACAACTTCAAACACAAATTCAAACAATCAAGTAAATAAAACTGAATCGAAACCCGTCGAGTGCAACCTTTGTCacagaaagtttaaaaatattcctgCTTTAAACGGCCATATGCGTCTTCACGgtggatattttaaaaagGATGCAGATAACAAAAAGTGCGAAAAGAAAGACGCAAATGGACCACCATTACAAACGGCCAGCGTGAGCGTTCGAGCTCTcatagaagaaaaaataataaacaaacgaATAACAAATCCCCAAGCGTCAACGAACAGCGAAGAGCCGAGATCGTCGGCTCCACCACTTTTTCCTCTAACTGTGCATTCCTCAAATAATTCAAACGACTTGGACTCGAAAATAACTTCGTTTGTAGTACCTGCACCGCCGCAACAAACTTCTGAAAAAGGAAGAAGACATTCCGAAACAGAATCTTACACGTCGCAGAAACATCAAAATACCCAAAGAGAAGCCGAAGCTTTAGCCGACTTAATACTCAAAAAAGGCAAAGTTGCAGTTAAAAGAACCGCTTCCGACCCAGGTCAATCCACGCAAAGAGTGATCCAATTACAAAGTGGAGAATCCTTAACTCTAACTGGAGTATCATATCAATCCGAAGACAATAGTGGATTTTACTCTCAAAGTCTTCAAGACGAAGTTTTTACACAAGTTCAAGATTCTATGCTCCTTCAAAGCGTAGACACCCAGCATTTAACTTCAATTCAGTTCCAAACCGACTCGCTGTTGCATAACGAAAACGAAGATCAACTTCAAGACATCGCGTCTTTAGAAGATTACGCTAACGTAACGGCAAGTTTACAAGAGTCGGTTCATTCGCCACCTTATCAAACGAGTCATTCTGTTAACCAAAATTTACAGGCAGTCTTAGACTCGCCTTTACCAGAGAGCTTGGCGGAGTTTAGTACGTTTCATTCGACGTCGAACTTAGACATGCCATCTCCCGGCTATCAGTCACAATCGCCGGCACAATATTCGGAATCTCCTCATCCGTCTTTAACCGCTCATTCGCCGCTACAATCGCCACTAGTAAGGCACGATTCGCCGGGGTTTGTTTATCCAACACCACCTGCTAGTCACGAAGGCCAAAGTCCTTGCTTTGGACAAAACTCCATGTTACCTATGGTTTCGCCCAAACAAAACGAGTTCACGCAGCTAGGACAAGACTTAGAAGAGCCTCCGCAAGCGTCTTCTCCACTTTCTGCGGCATTTTTTACTTCGACGATGTCGAGTTCGGCAGCGGTCGAAGAAGCGTTGGAAGAAGTACTTCCAGGAGAAACTATTTCGACGGACGACATATATCCTCTCTCTAATTCGCCTGTACCACAATCGCCTATGTCAGTTGGCCTTACACCCGTTGCCTCGCCTCTTTCAAATATACCGTCGTCTTCGGTATCTTCGCCACATCCTTCGGTGACTTATACCGCATCACCGAGCACAGTTCAATTTCCACTATCGCCTCATTATTCTTTTCAATCGCAAATGATGCCAAACTCGGAAGATCCTCTATTATCCAGCAGTCCGAAGGACACGAAAAAAAAGTTCGAATTCAACGGATTGCCTTTAAAAGTTATCAGTACAAACGGACTTTTAGACTTAAATAATACGAATTTTACTGGAATTCTCGTCGATAGTAACGGAGAATTAAAACTCATTCAAACGAACGGCGGTtcgttacaaacaaaaaatattgttgttaCGGGAAATTCGATTATGCATACGCACAATTTAGATGCGAAAAATGGAGATAAATTGcagaaaattaattctgtGGTACATTATACCATTCCTAAGCAATCGTTAAAGGGTATTAAGCAAGATGAAGACGACATTTTTATAAGCCCCACAATtCGTGTGCCTGTAACTCAAGCCAAAGTTTCAAGAAAACGTCCAAGATCGGAGCCTTTACAATTACCAGTTTTGCATCAATCGAGACTACGAGCCACGCGGAGTCGGCCCCACGGCTCGTCCACCTATACACCACCTCCATTATTAAATCCAACCAGATCGGGACCTGGATTGTATTGCagattgaaacaaaaattagtcaACGATGCGCGGGAAGAATTGATGAATATTTGGAATAACGAATCCATTCCCGAGTCCGACTCGACACCTCACATTAATATCGGTTCACAATTTCAAAGTTCCATTCCACACTTGAGAAAACCAACGTATCAGTCGAACGAAGACAAATCTAAAGAGCAGTTGTTGTGGGACCTTCCCGTCGATACCTACATCGATAACGAAgTTGACATGTACTTGGATTTCGCGTGCTGCGCAGCAGTCCCAGGTGGAGGACGTAATAAAGAATACGCGATGCATCTTTTACAAATGTGCGGTGGGAATATTCACgacGCGATGTTGAAACTCATGCAACCTACTCCGGCTCTTCCTTTCGATCATCCGTTGTTACATTACCATTATAGCGACAGTGATAAGTGGTCGCTAGAAGAAATTCAGGCATTTCAACAAGCATTATTGAGATTCGACAAGGATTTTTTTAGTATATCGCGGGAGattggAAGTAAATCTACGAAGCAATGCgtgcaattttattacatatgGAAAAAAGTGTGTGTAGAAGAATAccgaaaaataaagttatctAGAGATTTTAATCGTGGATACACATCGGGATACGAATTGGAGCCTGACGAAAAACCTCATCCAGATGTAAAGTTGTTAGGAATTGCTGATGCCGAGTCCCCGATATCCGTTCAAGAacataaaaactttatttgcgAGTTTTCGGACTGCTCGGCGAGTTTCAATTCGAAGGCTGCTTTAAATGGTCACATAAGAATTCACGCTGGAACGGTTAGAAGTTCGCCAATTCCGCCGACGGTGTTGGAAAGACGGGTaccgacgacgacgacgacgacaaTATGTCATTTAGATACGTCCGAAGATTATCCTTGTAAGATATGCGGGAAagtatttacaaaaataaaaagtcgcAGCGCTCACATGAAATCTCATCGTCCTCCAGATACTGAACCAGTTAGACGAAAAGAAAAGGATGTATCGTGTTCTTCTAGTTTTAATGTATTTGTATCGAGTTCTTCGAACACTTAG
Protein Sequence
MVRLSKELKRLKTANCGKLCDRASKRIETHNVEVEQVAYGKINYADERGSKCIIRATEGVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPTENEAVTTTTEDKKPQVGSSSEIVKLAVKRPRPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSSTVSTNTTTMSPAQGAATGDAASPHGSSCIQYAPPPTSTSSGKSQLQQLLATEPVKSNGSNNDGLTKQQLDLIHQIMEQTQRQSHTVNKPATKPVSKPHSKTSNKIQKVWTSTTQQTATNKTSLSTSTPQTKVTTTTSNTNSNNQVNKTESKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDADNKKCEKKDANGPPLQTASVSVRALIEEKIINKRITNPQASTNSEEPRSSAPPLFPLTVHSSNNSNDLDSKITSFVVPAPPQQTSEKGRRHSETESYTSQKHQNTQREAEALADLILKKGKVAVKRTASDPGQSTQRVIQLQSGESLTLTGVSYQSEDNSGFYSQSLQDEVFTQVQDSMLLQSVDTQHLTSIQFQTDSLLHNENEDQLQDIASLEDYANVTASLQESVHSPPYQTSHSVNQNLQAVLDSPLPESLAEFSTFHSTSNLDMPSPGYQSQSPAQYSESPHPSLTAHSPLQSPLVRHDSPGFVYPTPPASHEGQSPCFGQNSMLPMVSPKQNEFTQLGQDLEEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGETISTDDIYPLSNSPVPQSPMSVGLTPVASPLSNIPSSSVSSPHPSVTYTASPSTVQFPLSPHYSFQSQMMPNSEDPLLSSSPKDTKKKFEFNGLPLKVISTNGLLDLNNTNFTGILVDSNGELKLIQTNGGSLQTKNIVVTGNSIMHTHNLDAKNGDKLQKINSVVHYTIPKQSLKGIKQDEDDIFISPTIRVPVTQAKVSRKRPRSEPLQLPVLHQSRLRATRSRPHGSSTYTPPPLLNPTRSGPGLYCRLKQKLVNDAREELMNIWNNESIPESDSTPHINIGSQFQSSIPHLRKPTYQSNEDKSKEQLLWDLPVDTYIDNEVDMYLDFACCAAVPGGGRNKEYAMHLLQMCGGNIHDAMLKLMQPTPALPFDHPLLHYHYSDSDKWSLEEIQAFQQALLRFDKDFFSISREIGSKSTKQCVQFYYIWKKVCVEEYRKIKLSRDFNRGYTSGYELEPDEKPHPDVKLLGIADAESPISVQEHKNFICEFSDCSASFNSKAALNGHIRIHAGTVRSSPIPPTVLERRVPTTTTTTICHLDTSEDYPCKICGKVFTKIKSRSAHMKSHRPPDTEPVRRKEKDVSCSSSFNVFVSSSSNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00928137;
90% Identity
iTF_00950799;
80% Identity
iTF_00950211;