Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 5.5 1.8e+03 -1.1 0.1 14 24 39 49 34 50 0.82

2 2 7.2e-09 2.4e-06 27.3 0.1 4 39 59 94 58 100 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	5.5	1.8e+03	-1.1	0.1	14	24	39	49	34	50	0.82
2	2	7.2e-09	2.4e-06	27.3	0.1	4	39	59	94	58	100	0.89

Coding Sequence: ATGGAAAATATTCCAAGAACATTGAGAAGTAGGATACGTGAAATCTGCCATATTAAAGATATTGCTGAAAAGCAACGTACAGAAGATTGGCAGATGTTGCAgTATTCCCGTCTATCGAAGAAAATGTCTCGCCGAAAACTTTCTAATGTGCAAATCGAGAAAACTCCACTAGCAGCTATGACTAATGCAATTCGGGATATCAAAGTTAATGGAGTATCTGTTAAAGCAGCAGGTGTAAGATATAATATTCCACGCACCACGCTAAGAAGATatgttgaaaaataccACGACACTTCTAACGAATCTTCTCCGCCACAGTCCTTAGGAGCAGAATTAGAAAATGCGTTTAGTTCTGACGACAGTGTTTTTGATGCTAATTATAAACCGTCATCAGAAAGTGAGGATCCTGGTgatttagaagatattcaaaaaaacCAATCAGCTTCTTCATCTACTACTTCTAACGATATCGCCGTAGCTTCAGGGCAACATTTTAAGATCCTCAGAAATACATGGTTTGATAATTTTCATACACGGACAGAGCGACAAGCAAGAGATAAGGCAGCTCCAATAAGGGACATATGGATAGTGCCGAATAATAACCTACGTCAATGCTTCAAACCCTATGAAAACCTAACCGTTGATGAACAGCTTTTTCCGTACAGGGGTAGAACTAAGTTTACCCAATACATTCCTTCAAAGCCAGCGAAATATGGCATACAACTTTTTAGGGTAGCAGATTCAAAAACAGGTTATCCATTGCAGGGAATGATTTATACggGCAAACAAAATGGAAAAGAACGCCAAGTCAATGTTGGAGAAAAAGTTGTAATGAATCTTTCTTTAATAGCTAGTATTACGTTTCAGAATGACTAA
Protein Sequence: MENIPRTLRSRIREICHIKDIAEKQRTEDWQMLQYSRLSKKMSRRKLSNVQIEKTPLAAMTNAIRDIKVNGVSVKAAGVRYNIPRTTLRRYVEKYHDTSNESSPPQSLGAELENAFSSDDSVFDANYKPSSESEDPGDLEDIQKNQSASSSTTSNDIAVASGQHFKILRNTWFDNFHTRTERQARDKAAPIRDIWIVPNNNLRQCFKPYENLTVDEQLFPYRGRTKFTQYIPSKPAKYGIQLFRVADSKTGYPLQGMIYTGKQNGKERQVNVGEKVVMNLSLIASITFQND

Sequence clustering based on sequence similarity using MMseqs2