Basic Information

Gene Symbol
JARID2
Assembly
GCA_950108345.1
Location
OX467285.1:26398963-26406576[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-22 9.5e-19 67.8 0.0 7 89 1800 1880 1795 1880 0.93

Sequence Information

Coding Sequence
ATGGTAATAAATAAACGAGAAGGAAGAAACATGAAGAGAAGACGTAAAGAAGGTAATAATACTTGCCACCTGCTCGACGATAGTCCAAAAAGAACAAAGGTTCATGCACAACGTAAATTTGCTCAAGGATCAAACGTGAGTAGTCCCGTAATAACACCAGTAAAGGAAGTCGATAAGCAAgacaaaactaaagtagatGTTTTTCCCGAACCTCAAGAACTTTTAGCGATCAATAGACCGCACACCGAAGATTTCTTAACATTTCTGTGCTTTCGAGGAACAACGATGTTACCTCCAAcactaaacttttttaatgcaGCTCCTATAGATTCAGACACGCATTTACAAACTACCGATGAAGAACCTACAGAGTCGTGTCCGCCGATAGCAAATATAAATCCTAAAATTATGGCGAGTACGAGCGAAAAACCTTTCATTGCATTTGGAGTTCGTAAACGTGCCGATCCTATTTTGGTTAGTAAACATATGGATAAGAAACGTAGACATGCTCTTGCGTTACAAGCGTTACGCCGAAAATATCAAGAACAGAAGATGGCAAAAATTCGTGCTGTGACTATTAGTAAGTTGTCCGAAAaggtttcaaataaaaatttagttcgAACCAGATCGATAACTAAAAATGAGACcgtcattaaaaaaaatattccgactaaaaataaagttaaaattgtttcgTCGAAGCATGTAAAAATCACTAGATCTTCTATTAATCCTAATTTAAGgacaaatttaaaagcaccAATAAGGAGacatattaaaaagaaaatgtgtttaaGAAGCTATAGGGGAAAATTTATTCAGCACGagttgcaaattaaaaaaacgaaaaaaagaaaaattacaaatactGCAGGAAATGATAACTCGGAATCTTCGGATTTTTCTTCTGACGACGATGAACCCCTCTTGAAAActgttaagaaaattgtaaaaactaacaaagtaGCGTTGCcaaaaatatcccaaaaaTGTGGAGCAAGTTCGAAAAAACCTACCGAAActaaaaattatagGATTACCAGAGCAAGCAATTCATTATTTTCGTCAAATATAGATCAATctgtaaaacgtaaaatacaaatttccaaatctacaataattacgaaatctccatttgttaaattaacgCCTCCTAAACGTGCAACAGAAACACATACAAGTGCAAttcaaaaagcaaaaaagatagtgaaacttaaaaaggcagacttgaaaaatgtaaaaacgaAAGTTGTCGAGAAAGGTTTAAGAAAATTAGACGAAAGACGAAAATTGAGAAACTCTTCTTCACCCTTGGGTAAAAAAGACAATTTCATACAATCAGTTCTAAGTCCtgaacaaaagaaaaaatctaatcaGACTGAAAGCGCTTCGAAGAAGATTGTACAAAGTGATAGCAACAAATcggttttatcgaaaaagaaaagtttagaGAAGCTAGAAACATCGTCTGAGAAAGCTGTGAAGCAGAAGCCGAGTGGGCAAGGAATTAAAAACAAGAAAGTAGAGATGGAGAAGACTGATGTAAAAGTTACGGTAGTTAATAAAGCTGAAAGTATTGTAGACAAACAaaccaaaagaaaatttagtgagACTGAACAGTGTGCAAAAGCAAAACCTACCAAACCAAATTCGAGTAATACTGATGAAATAGTGAAACAAGAAAAAACTAATTCTATAGTTGAAAAATCTGCCCCTACGAGCCCAAtagaaagaaacaaaaaacttaaaatagaaGCGCCTCTAGAAAAAGAAGTAAAGAAGAAATGCTTTAAATCGGAACAAACGTCAGCTGAAGAACCTAAAATTTCTCAGAGACCATCCAGAAAAACTAAGGAGGCAGCCGCAATTTATATGGAAATTTTAGGTCACAAGCTTGTACACGATGGTGATATTGATGATGACGACGTTTCAATAGACAGTTTTCCGGAACTTCCAAATGTACGGAAAACAGAACAAAGGGAAAATGAAATGAAAGCTCGAGTTAAACCAAGCACCAATGTCGATAATAAACAAGTGCCttccaaaaagaaaattgtaagtaGAAATCATCCGAAGGATGTCAAAAAGCTGGGTGATTCCAATAAGACTAGTATTCTCAAGGAAACGAAAAGTGATACGAGAAAAAGTTCAAGTGCCAAACAAGATACGAATAAGTTCGAATGCAAGGATccaattttgtcaaaaagtgaAATCAATATTGATAATAAACGTAAAACTAGAGGGTCTACCAATAAAAATAGGGCGTCTGGAGATTTGGATGATTTGATTAAAGAAAAGAATCAAAAAGAAGACATTCTGGAATTGAACGAGATTACTGATAAAACACAAACCAAATTGAAACaaatagaagaaattaaagTTAAGGATTTGAGTAAAGAACAAACGAAAATATCCACTTctgctaataataataagaaagcCAATGTTACTGAAGTTAAGCCAGAGGCTAAGCTTAACAAACCTTTGAAAAAAGAATTGTCGAATGAGTTTGAAGATTCTAGTAAATCAACGACCAATAAACCAATTAAAAGTTCTGTACTAAATGATAATCCAGATGATCTTTCTGAAGCTAAACCTAACAGACCTTTAACAAAAGAAGAGTTGAGCGAATCTGAAGATTCTAGTAAATCAAAGTCAAATAAACCAATCAAATGTTCtgataataatgataattcAGCTGGTGCTCCTAAAGCTAAACCTAGCGGACCTTTAACAAAAGAAGAGTTGGGTGAATCTGAAGATTcttgtaaattgaaattcaatACGTCAATGAAAGTTTCTGATGTAAATGTTCCAGCTAATAAGATAGCTGATGCTACTAAAGCTGACCCTAACAAAGCTTCAGAAAGAAAAGAGTTGAGTGAATCTGAAGATTCTAGTAAATTAAAgtccaataaaacaataaaatgttcAGATGTAAATGATACTCCAGCTAGTTCTCTTAAAGCTAAATCtaacaaacttttaacaaaagaagAGTCCAGTGAATTTGAAGATTCTAGTAAATTAAAGTCCAATAAACCAATGCAATGTTCTGATGTAAATGTTCCATCTAATAAGACAACTAATACTACTAAAGCTAAACCGAAAAAAACTTCACAAAGGGGAGAGTCAAGTGAATCTGAAGATTCTGGTAAATCAATGACCAATAAACCAATCAAATGTTCTGATGCAAATGATAATACAGCTGATGCTACTAAAGCTACACTTAACAgatctttaataaaatataatttgagtGAATCTGAAAATTCTAGTAAAGTGAAGTCCAATAAACCAGTGAATTGTTCTGATGTAAATGATAACCCAGCTGGTGCTTCAAGAGCTAAACCTAATAAATCTTTGGAAAAAGAAGGGTTTGGTGAATCTGAAGGTTCTAGTAAATCAAAGTCCAATAAACCAATCAAATGTCCTGATGTTATTGATAAACCAATACTTGCTGTAAAAACAGACACCAAATTACAAGAAAAGGAAGATTTAAATGAGCCAATTTCAAAGTATTCTAAGACAGCTACtgtaattgataaaaaaattactgtagAAGAATCAAAAAGGAAATCACGCAAATTAGAAGTTGTCAGTGATTCGGAGGAATCAGTAAAATCTATCAAAAAACCAGTCAGatgttataataaaacaaaaaaaattactaaagtaAATAAGCCCATTGTTGATAGCAGTTTTAGTGACTCGGATGAAGAACCTCTTTCTAAATTAGCTTTAagtaaaatcaaaactataattaaagGAGAGAGCGAAACTCTTCCTAAACAAGAAGctaagaaaaacaaatcggAAAGTGCGCCTAGAGATGTTAAAAaggtaattaaaactaaaaccaaaAAGGAAGTTGACGAAACTAACGTAAATACAGCTTCTTCTAATTTAACTTTGTCTGGTAAACCTAAAAGAGAATGTACCAAAAGacctcaaaattatttacctataTTTTCTTCGTCAGAAGATGAAGAGAGATATTTTAGTGGGTTTCTAAGAAGTGAAagtgtaaaacaaaatccgAAAACAAAACTTCAAAGTAAATGTACACCCACCACACCATCGGCAGATCTGTTATGTAGAGACGTAGATAAGCGATTTGGAAAGGGTAAAGTTAATATGTCAACTGAACAAATAGAGAAATGGTTAAACGATAGTGTAATAGCTGGCAGTGATGAAAAAAGTGAAGGGACCAAtgagaaaagtaatttacaaGACCAAAAAGAAGACAGTTGTTTAAAGCCGGTcattattaaagaagaaaaacaattgcTTGAAAATGTAAATGCAGGAAATGTTGAAATTTCGCCACTGAAACACACCGAACGAAAAACAATATTTCGTAAAGAACATAAAGCGTCAATGCCGAGTGTCAATGCTTTTTCGCCTAACAACGAAAGTAGCGTGTATGCATTTGAAGCCGATACCGAAGATACTGTAAAGACGCCATTTAGGAGACCCGTGACCCGTAGACCATCCAGTACAGGCACATCCAGATCTGAAGACTCTTCTAAGTACGAAGagtctaaaataaaaaaattctacacGCCATCTCcagtaaaacaagaaatagcAAAGCCAACGAAGAAACAAGAAGTGTCTCTCACTTTATCCACCGACGAATCTAATAATAGTGCTTCGATCGCCGTACATTTAGACTTGGAATCGCCAAATTCCACCAGAGGAGTTGCTACCAAAGCCGATACAGAAAATGGAGAGCAGTTATTTTATATACCTTTACAACCTGGAAAACAAGGTTCGTCGAAACTTATTCAAGGCGTTACGGTTAAATTGGGTACCAAAGGTGCGAGTGGCTCAAATCAACAGGTGGTAGTTAGTGCAAAACTTGTAACTCACTCACCTGCAGGAGCTCAAAAATTGGTAGAAAAACCATTAACAACTTCCACGCCGATGTATCCACCAGCAGCTGTAAtgcaaaaaagtaaattgcaCGATAATAAAGGCACCAAGAATTGTGGAAAAGCAGAGAGCTTCGACGACTTCAAGTATAAAGTACCTAGTTCTCCCAGTGCTAGCTCTTCTTCAAGTACGAAAGTAACtaaacgtcaaaatttgaaatctcGACTTCGTTCTGTTGAGTTTTGTAACCCCAAAAATATGAGTGAGTTTCCTACTAGTCAAAATTCGGCGACTTTACTTGAGGCGCCTGTGTTTTATCCAAATGATAAAGAGTTTCAAGATCCTTTAGAATacatagaaaaaattaaatctcatgCGGAAAAGTTTGGAATATGTCGCATCGTACCTCCTAGCACTTTCAAACCCGAATGTAAAGTTGCGGACGATATGCGTTTTACTGCTTACAACCAGTATGTCAATAAGATGTTACATAGATGGGGACCAAATTTTAAGGAATTAATGGCCATAACGAAGTAtttgaaaactcaaaatattacTCTGACACATCCACCATGGATTGGAGGAATGGAAATCGATTTGCCCCGCTTATACCAAATAGTCCAGTCTCTTGGTGGATTAAAAGAAGTAATTGAGAAGAAAAAGTGGCCAAAAGTTTCTGAACTGAtgaaaataccaaaatccgCTCAAGACAGGGTAACGAAACTGGATGATATTTACTGCAAGTATCTTTTACCGTACGACACGCTTTCTCCTGCtgaaagagaaaaactttttgatgaAGTTGAAACTGATTGGGCCAAACGTGAATCGCGTTCATTACTGAAGTCTCAACAAAAAATCACAACCCTCGATAATAGTTCCAACAATTCAGATTCAGATTCTGATGAGGAGTCTGAAGAGTGCATAGTTAAGGGCCGTAACATGGCTCTTAATGCATTTTATCGTATTGCTCGTAATACCATGACCATGTGGTTTAAAACGATGGAACCAGAACCGCAAGAGgtCGAACAAGAGTTTTGGAAACATGTTACGGTTAAACAAAATCATCTATGTGTGCACTCTGGCTCTATCGACTCTGGGAGTTGGGGTTACGGTTTTGCCGTTTCTAAGAACAGTCCATTTGCTAGACATGCTTGGAATCTTAAAGTTTTAACTAATAACAGCGGCTCAATTTTAAGGTCTATGGGTCCAGTCATGGGGGTAACTGTACCAACTCTTCATGTTGGAATGGTATTTAGTGCTTGTTGTTGGTATCGAGATCCCCATAGCCTGCCATGGATCGAATATCTCCATACTGGtggtaataaaatttggtaCGGAATACCAAATTCTATGAGCGACATGTTCCATAAagcgttaattaaattagtgcCAAATTATTGTCGAAATAAGTCTCTATGGTTGCCATCGGATACAGCAATGGTACCACCCAGTCTTTTAGTTGAAAATGGCGTGTCATTATGTCGCACTATTCAACAACCCGGACAATTTATAGTTGTTTTTCCTAAAGCTTTCACCTCTAGTGTATGTACAGGATATGTAGTATCAGAAAGTGTTTATTTCGCACCCTTGAGCTGGTTAACCACAGCTCAAAGTATATTTAAAGACCTCAACGATAGCTGTGAGCCTTCGATGTTCTCATtagaaaaattagttattaatatCGCGTCAGATGTTCGTTCAAACCCAGAAGTGTTGAAAAAGATCATACCAATTATCGAGTTATTCGGCGAAGCCGAAAAAACTGCATGGGAAAATTTAGAGAAGTTAGGATTAAggagtaaagaaaagttaccATTACCAGACACGCCagttaaaaagaagaaaaaatttcaaaacgacACTGGAGATTTCGAGTGCGAAGTCtgctgtaaaaatttatttatttcttggGTAAGGGAATCTgaagatttaatttattgtttgacCCATGCTTGTGAATATATCGAAAGCAAAAAGATTGAACCggaaagttgtaaaataatgTATACGTACGATAGTGAAgagctaaaaaatttaattcataaaataagGAATGTGATTGAAATGAAATTACAGAAGAAAACAGCTGGAAAAATAGTGGCGATTGCataa
Protein Sequence
MVINKREGRNMKRRRKEGNNTCHLLDDSPKRTKVHAQRKFAQGSNVSSPVITPVKEVDKQDKTKVDVFPEPQELLAINRPHTEDFLTFLCFRGTTMLPPTLNFFNAAPIDSDTHLQTTDEEPTESCPPIANINPKIMASTSEKPFIAFGVRKRADPILVSKHMDKKRRHALALQALRRKYQEQKMAKIRAVTISKLSEKVSNKNLVRTRSITKNETVIKKNIPTKNKVKIVSSKHVKITRSSINPNLRTNLKAPIRRHIKKKMCLRSYRGKFIQHELQIKKTKKRKITNTAGNDNSESSDFSSDDDEPLLKTVKKIVKTNKVALPKISQKCGASSKKPTETKNYRITRASNSLFSSNIDQSVKRKIQISKSTIITKSPFVKLTPPKRATETHTSAIQKAKKIVKLKKADLKNVKTKVVEKGLRKLDERRKLRNSSSPLGKKDNFIQSVLSPEQKKKSNQTESASKKIVQSDSNKSVLSKKKSLEKLETSSEKAVKQKPSGQGIKNKKVEMEKTDVKVTVVNKAESIVDKQTKRKFSETEQCAKAKPTKPNSSNTDEIVKQEKTNSIVEKSAPTSPIERNKKLKIEAPLEKEVKKKCFKSEQTSAEEPKISQRPSRKTKEAAAIYMEILGHKLVHDGDIDDDDVSIDSFPELPNVRKTEQRENEMKARVKPSTNVDNKQVPSKKKIVSRNHPKDVKKLGDSNKTSILKETKSDTRKSSSAKQDTNKFECKDPILSKSEINIDNKRKTRGSTNKNRASGDLDDLIKEKNQKEDILELNEITDKTQTKLKQIEEIKVKDLSKEQTKISTSANNNKKANVTEVKPEAKLNKPLKKELSNEFEDSSKSTTNKPIKSSVLNDNPDDLSEAKPNRPLTKEELSESEDSSKSKSNKPIKCSDNNDNSAGAPKAKPSGPLTKEELGESEDSCKLKFNTSMKVSDVNVPANKIADATKADPNKASERKELSESEDSSKLKSNKTIKCSDVNDTPASSLKAKSNKLLTKEESSEFEDSSKLKSNKPMQCSDVNVPSNKTTNTTKAKPKKTSQRGESSESEDSGKSMTNKPIKCSDANDNTADATKATLNRSLIKYNLSESENSSKVKSNKPVNCSDVNDNPAGASRAKPNKSLEKEGFGESEGSSKSKSNKPIKCPDVIDKPILAVKTDTKLQEKEDLNEPISKYSKTATVIDKKITVEESKRKSRKLEVVSDSEESVKSIKKPVRCYNKTKKITKVNKPIVDSSFSDSDEEPLSKLALSKIKTIIKGESETLPKQEAKKNKSESAPRDVKKVIKTKTKKEVDETNVNTASSNLTLSGKPKRECTKRPQNYLPIFSSSEDEERYFSGFLRSESVKQNPKTKLQSKCTPTTPSADLLCRDVDKRFGKGKVNMSTEQIEKWLNDSVIAGSDEKSEGTNEKSNLQDQKEDSCLKPVIIKEEKQLLENVNAGNVEISPLKHTERKTIFRKEHKASMPSVNAFSPNNESSVYAFEADTEDTVKTPFRRPVTRRPSSTGTSRSEDSSKYEESKIKKFYTPSPVKQEIAKPTKKQEVSLTLSTDESNNSASIAVHLDLESPNSTRGVATKADTENGEQLFYIPLQPGKQGSSKLIQGVTVKLGTKGASGSNQQVVVSAKLVTHSPAGAQKLVEKPLTTSTPMYPPAAVMQKSKLHDNKGTKNCGKAESFDDFKYKVPSSPSASSSSSTKVTKRQNLKSRLRSVEFCNPKNMSEFPTSQNSATLLEAPVFYPNDKEFQDPLEYIEKIKSHAEKFGICRIVPPSTFKPECKVADDMRFTAYNQYVNKMLHRWGPNFKELMAITKYLKTQNITLTHPPWIGGMEIDLPRLYQIVQSLGGLKEVIEKKKWPKVSELMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPAEREKLFDEVETDWAKRESRSLLKSQQKITTLDNSSNNSDSDSDEESEECIVKGRNMALNAFYRIARNTMTMWFKTMEPEPQEVEQEFWKHVTVKQNHLCVHSGSIDSGSWGYGFAVSKNSPFARHAWNLKVLTNNSGSILRSMGPVMGVTVPTLHVGMVFSACCWYRDPHSLPWIEYLHTGGNKIWYGIPNSMSDMFHKALIKLVPNYCRNKSLWLPSDTAMVPPSLLVENGVSLCRTIQQPGQFIVVFPKAFTSSVCTGYVVSESVYFAPLSWLTTAQSIFKDLNDSCEPSMFSLEKLVINIASDVRSNPEVLKKIIPIIELFGEAEKTAWENLEKLGLRSKEKLPLPDTPVKKKKKFQNDTGDFECEVCCKNLFISWVRESEDLIYCLTHACEYIESKKIEPESCKIMYTYDSEELKNLIHKIRNVIEMKLQKKTAGKIVAIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-