Mgen022733.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:295407758-295419205[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.065 5.1 8.9 0.3 3 21 14 32 12 33 0.92 2 11 0.61 48 5.9 0.6 3 23 305 327 303 327 0.91 3 11 0.032 2.5 9.9 0.5 2 20 534 552 533 554 0.92 4 11 0.0076 0.59 11.9 2.1 1 23 574 597 574 597 0.96 5 11 0.027 2.1 10.1 0.7 1 23 602 626 602 626 0.93 6 11 0.00032 0.025 16.2 0.7 2 23 643 665 642 665 0.97 7 11 0.017 1.3 10.8 0.0 1 21 670 690 670 691 0.96 8 11 3 2.4e+02 3.7 0.2 2 17 927 942 926 948 0.80 9 11 0.76 59 5.6 2.7 2 23 960 980 959 980 0.93 10 11 1.8e-05 0.0014 20.2 0.1 1 23 986 1009 986 1009 0.93 11 11 3 2.3e+02 3.7 0.4 3 12 1035 1044 1034 1045 0.86
Sequence Information
- Coding Sequence
- ATGTTTCACGAGGAAGTCGAGCTGGACGATACCCACCTCTGCAACAAATGTGGCCGCACCTTGGTAGGGTTGGAAAATTACATCAAACACAGGAAGGTAAGCTGTGTCCAACCGAAACCGGCAACGGTGACGATTGCCAGTGGGTCCAGTCATCGGATTGCCACCGAGCAAGGCTATACATCGTTCGATTTCGGCGAGGGAATTAAAGATTCGGAACATCACAAGAAACTACCGAACTATAGCTTCAACTATGACTTGGACGCACATCACAGCGATCCGGTACAGCGTCCAGATAGCAAAACTGACTACAAGAATGATGTCAACTACGATTATGAGTTGGGGGCTGATTTGTTTTTCTCGTCTCTCGAGCTACAAAGCAGTTCAAAGAAAGCTGGAACTATCCATTCATCTGCCACGAAACTGCATGCCCCCAGCCGACCGAAAGTTAGAAAACAGACTACGTCACTGTCAAACACGGACCCCGATCATGAGCATGACAACGAAGACGATTGGATTGCGCCTCATCATGCCTCGGAGAAACTAATGAAAGCTGTCAGCGAAATCAGCGGAAACAAAAAAGTTGAACCCCTGTTTCCATTCTTTGAACATGAGTCCCCGGAGCCTTCCGACGATGAAAGCGAAGAGGACGATGATTTCGATGCCCCACCTAGAACACACACGGGCGGTAAATGGAAACCCGAAAATCGGCCAGTCTCATCCCAGTGGCGCCATTGGCCCGACCAGGAAGGACAGCTGGACAAATCAACCGAGCACGAGGAAGAAGAAGAGCACAAAAGTTTCTCTCCACCTCCGGGACATACCAAAGGAAAATGGGTTCCCGGATCAAAAATCACTCGTTTGGAGTACAAATTGCCCACTCTTCCGTCGAAGCCGTATGACGACAATTATTGGTGCAGTATTTGCAATCGGAAACTAGCCTCGCGATTCGTCTATGAGCGGCACCTGAAATCGAATCTGCATTTGAAGCGAGCACAAGAAGAATCCGAGTTGGAAAGAGCACTAAAACCAACACTCTATCCCAGTGAACTATCCAAACGAATCTCCCAACCGAGCCTCTATCTGGGAGATGATTTTCTCCACACTAATCTTAGTCCAGAAAAAACCTCAACACCCACCATCGCAAGCTCTCCGGTAGCTGTCAAAATTACACcgccgaaaacgaaacgaaaacgaaagtgcTACTACACCAAGTGCGAAATCTGCAAAACACGGCTGCCAACCAGTCTGCTCGGAAAACATCTGATCTCTCGTTATCACTATCGGAGGATGCTAAATCACCCGGAGCAATGTTTCGatgtaattttgaaaaatattcaccGAATTGTTCTGCAGTCTCCGTTCCAGTGTCATCCCTGTAAGTTCTATGCGAACACCGAGGATCAGTTCATGTCGCACTGGAACTCCGTAGAACACGAACAGCGAGTCAGTGTGGATGGGACGTTCTGGTGCAGTTTCTGCAAGTTCGAGTGCACCGAAAACTTCCACATGACCAACCATCTGCTCGGTTCCGACCACCGGGAAGTCATTTCCGTAATCAATCGGTCCGTTCCGATCATAATCAGAAAAATCACACCGATCGTGTGTAAATTTTGCGGCGATGAGTTCCGCTACAATGCAGAACTTAAGAAACACCACGAACGGTGCAATGAGGGAACTCCCGAAGACGCCATGAAAGCCAAACGTTCATTCCAAAACACCTTCACGTGCAACATCTGTAAGGCTTCCTTCCACAATAAGATGCTGCTTCTGCAGCACGGTCAGAAACTTCACCGATTGGCCAACTACTACTGCTCGATATGTGAGATGTCCTTTCAAACGCCCAAGGAATCCGTACGGCATCGACGAACTACCGCTCACAAAGTGATGTCGGCCagaaagaataaaaaatcgaacattGTCAGCAAAAAATGTCACGTGTGTGGAAAAGAACTGGCCGATATTTTGGAACTGAAGCGTCACATTCGAACCGACCATCCGGAGACCAAGTACAGCTGCCCACGGTGTGGGGAAAATTTTGTTCTGGCCCAGGAACTCGGCAGACACGTACGTGACAAAAAttgtacatttttcaattcCACCACATCATCACCGGCGTCGTCGTTACCGTCATCAGTGCCAGCACTAGTCCCGGCAGGGTCCGCCGAAATGAAAACTCTCCCATCAACATCCCGTGCGCATCTTTCGGGCGAAAATTCAATTATCCTAAATGATTCAATTAAAGTAAATATGAATGATCGTAAAATAGGAAAGGAGTCACATCTGTATTCTTCGACTTCGGCGACGGTGGTGCTGGTAGACGACAGGACGACCCGAGTCCGAACGGAAACAGCGGCGAGAGTATCTCCAGTATCTTCAGTGCCGATTGTAGCACCGACGGTAGCAGCAACTGATGAACCGGAAGTGCTAGAAGCCATGCAAACAATCGCTCTTATGGATCATTATTCTAACCTTTTGCCATCATCATCGGCACCAAGATCAACCTCCGGAATTGAGAGCCATCCTGTCGTGTCCTCCCACTATCATACCGAACCGCACCCACTGGCATCGGCAATGACCCCTGCCATGACCCATCGGACGCCGGTCACCAGCTCGACCTCGACGACATCCAATTTCGTCTGTGATGATAACATTGTCGCCAGTTCGTCCACGTCAGCAGAAATCTTTTTCGCCATGGCCAATAATGCGTCCGAAAATAATACTGTTTACGTTGATGAAATCGTCGGTACCATCAGCGAGGACagttcggtcgtatcctggcaGTGCAAAATATGCCCATTCAGGACGACGTCTCAGGCAGCATTTCTGTTTCACGAAATTCTACACACCACGAAATCGGCATCCGAATCGACGAAAATCACCTGCCCGCTCTGTAAGAAGCTATTTTCGAAAGCTTCACTGCGTTGCCATCTGCGGCAGCACACGGATGAGCGAATTTTCCCCTGCGAACTGTGTCCGATGAGTTTTACCCGGAAAGCCAATCTCAAGAATCATGTAGCCAACGTTCACGGTACGAAAGAGCGTGTGACCGAGCCAACGGGTGACAACGACGTGCCTGTCCGGGCCGGAGGAAAAACGGAAATTTGTTCCACCTGTGGAAAGGCCTTTGGAAgcaagtaa
- Protein Sequence
- MFHEEVELDDTHLCNKCGRTLVGLENYIKHRKVSCVQPKPATVTIASGSSHRIATEQGYTSFDFGEGIKDSEHHKKLPNYSFNYDLDAHHSDPVQRPDSKTDYKNDVNYDYELGADLFFSSLELQSSSKKAGTIHSSATKLHAPSRPKVRKQTTSLSNTDPDHEHDNEDDWIAPHHASEKLMKAVSEISGNKKVEPLFPFFEHESPEPSDDESEEDDDFDAPPRTHTGGKWKPENRPVSSQWRHWPDQEGQLDKSTEHEEEEEHKSFSPPPGHTKGKWVPGSKITRLEYKLPTLPSKPYDDNYWCSICNRKLASRFVYERHLKSNLHLKRAQEESELERALKPTLYPSELSKRISQPSLYLGDDFLHTNLSPEKTSTPTIASSPVAVKITPPKTKRKRKCYYTKCEICKTRLPTSLLGKHLISRYHYRRMLNHPEQCFDVILKNIHRIVLQSPFQCHPCKFYANTEDQFMSHWNSVEHEQRVSVDGTFWCSFCKFECTENFHMTNHLLGSDHREVISVINRSVPIIIRKITPIVCKFCGDEFRYNAELKKHHERCNEGTPEDAMKAKRSFQNTFTCNICKASFHNKMLLLQHGQKLHRLANYYCSICEMSFQTPKESVRHRRTTAHKVMSARKNKKSNIVSKKCHVCGKELADILELKRHIRTDHPETKYSCPRCGENFVLAQELGRHVRDKNCTFFNSTTSSPASSLPSSVPALVPAGSAEMKTLPSTSRAHLSGENSIILNDSIKVNMNDRKIGKESHLYSSTSATVVLVDDRTTRVRTETAARVSPVSSVPIVAPTVAATDEPEVLEAMQTIALMDHYSNLLPSSSAPRSTSGIESHPVVSSHYHTEPHPLASAMTPAMTHRTPVTSSTSTTSNFVCDDNIVASSSTSAEIFFAMANNASENNTVYVDEIVGTISEDSSVVSWQCKICPFRTTSQAAFLFHEILHTTKSASESTKITCPLCKKLFSKASLRCHLRQHTDERIFPCELCPMSFTRKANLKNHVANVHGTKERVTEPTGDNDVPVRAGGKTEICSTCGKAFGSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462743;
- 90% Identity
- -
- 80% Identity
- -