Mgen000897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:16144215-16153996[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.56 44 6.0 2.1 1 19 142 160 142 165 0.88
2 16 0.00043 0.034 15.8 3.7 1 23 172 194 172 194 0.99
3 16 0.15 12 7.8 0.4 2 23 211 232 210 232 0.96
4 16 1.4 1.1e+02 4.8 0.6 3 23 243 264 241 264 0.90
5 16 0.00016 0.012 17.2 2.1 1 23 270 293 270 293 0.97
6 16 0.0058 0.45 12.3 2.7 1 23 350 372 350 372 0.98
7 16 0.24 19 7.2 1.1 1 23 414 437 414 437 0.96
8 16 0.0016 0.12 14.1 0.4 1 23 555 578 555 578 0.94
9 16 0.2 15 7.4 0.8 1 21 677 697 677 698 0.96
10 16 0.0061 0.48 12.2 1.3 1 23 917 940 917 940 0.97
11 16 0.0042 0.33 12.7 0.8 1 23 975 998 975 998 0.96
12 16 0.14 11 7.9 0.8 2 23 1011 1033 1010 1033 0.96
13 16 1.3 1e+02 4.9 1.8 3 23 1050 1071 1048 1072 0.92
14 16 0.00043 0.034 15.8 0.1 1 23 1080 1103 1080 1103 0.97
15 16 0.00042 0.033 15.9 3.8 1 23 1109 1132 1109 1132 0.93
16 16 0.018 1.4 10.7 0.8 1 20 1136 1155 1136 1157 0.94

Sequence Information

Coding Sequence
atgGATCTTTCGGCCTCCTCCAGGGAGGATCCGTTCTCTGCGGACGGTATTTTCTCCCAGCAGGATCTCCCACTCGTGCCAAATGAGAGTCTCGAGTCGTACTGTCGCTTGTGCCTGACGACGCCTGATGTGGAACCCTTGTTTCCGATGGGAAGTGATCCAAACATCTACGCACTGGAACTGATCGGGAAATATATTGGCATTGATCTCACCAGCCAGGAAGACATCCGCTGTGCCATCTGTCGGCCATGTCAGCTTATTTTGGATCAATTTGATTTGTTCCGACAGAACTGCTTGAAGGTGGATATTGCCATAAGAAGACGACGGCTGGGCCTGGATAAGGTGATGAATAGTGAGCCACTTGACGATGCAGAAGGGGACGATGGAGAAGAACCGGCGTACATTCGGTTGGCGGATCGACACTACCAATGCCGTTTATGTTCGAAAGTGTTCCCTTCCTTAGCAGTGTTCATGAATCATTGCAAGGAGTATCACCCGGAGGAGTCGAAAGTTTTTAAATGCAAATATTGTACCAAATCTTTTATGACGAAAACTGCACGTCTGCAGCATATTCGGTCTCATCAACCAAACAATGCCCAGGAAATGGATATGAACAGTGATCGGATTCAGGTCTGCGAAAAATGCATGGCCACCTTCGATTCCTACAAACtgttgaaaattcatctaaaagaACATTCGAATGATCCGAAACAGGATCCTCTTACTTGTATTACTTGTCAGAAACAGTTCAGCCGGATTACGATTCTGCGTAATCACATCCTTCGGGTGCATTTGGGAAAACTTCCCCACGTCTGCAAGCACTGTGGTATCAGTTTTGGCTATAGTCGACAGCTTCTGGTTCATCTTCAAACCGAACATGGTGTTATAATATCCGGTCCAGAATTGGTAAATCAATCTGGTCAATCTTTGAATGAAGACGATGAGCAAGAAGAGGAAATCCCTAAACCAACAGTTGAAAAACCACGAGAAATGCCCCCTCGGCCTCCAACTCCTCATCATACCGCAACTCATAGAAAGAAATCTGATTACATGTGCAGCGAATGTACAGTTTCTTGTTCCACCACGGAGGAGCTAAGAACACACCGTAAGCTCCATCAGGATCCGACCTGGTGGAAGTGCATTCACTGCCGCAACTTCGTCAAGCACCAGAAGATGCATCTAATGAAAAAACACCCTTCGATCAATGCGGACGATGTCGATGCGGCTTTCCAGCTACGCTACCGGTGCTGGCTTTGCcgagtttatttcaaatcattgCAACAAATGGAACAGCATGTCAGCAGCCGGCATGAGGTCGAGCTACCGAACAATCAACCGGAACTGCCGAAACAGCCTCCGGTACCGGAGAAACAAGCACTGGTTCCGGTAATGGCAGCTCCCGGTCCACCACCGATGATGACTGCCCAGCCTCCAATGCCGATAGGAGCGGAACACTTGCCGCTACTGTTGTCGCAGCTTGAGAATGGTGCCTGGGATTATTTGCGTGATATGGCCAGATCATCCGAGGGAACGCTGACAAAGAGTGCATGTTGGCGGTCGCACAGTGGACACCAGGAGAGACAGGATTTCCGGCCACTGATGAAATTTTGTCCGGAGACATTCCATTATCTAATGCTTAAGGGTGGTTACACCAGGACAAGCTTCAAGTGTTCGGAATGCAATCAGATGTATGCATCGGCCGCCAGTCTGGAGCAGCACTTTGCTCGCTTCCACGATACCACATCCGATGATTTCGCCTTGGACCGTCACCACTGTCTGCGATGTAGTTCGTCGTTTGTCGAGGAGAGCTACTACAATTTACATCGTTGGGTGTATCATACGGGAGTCATAAACCACCGCCAAGGCACAGTTCCCCAGGGTCAGCAGCAAATGCAGTGGCACAAGATCGGTTTACAGATCCTATTTGTGTGTCTGATTTGTTCGCAGGTAACACGAAATCGTAGCCGACACATGCGAATCCGTCACGATACGCTATATAATCCTCGGAAGCATCGATTTTCGATTCGCTACAAATGCAAACGCTGCCTGGTGATGTTCAAAGGTAGTACTACCTTGCTTACTCATCTACAATTTTGTGGGGATATCGACATCAAATTGAGGTTAAGCTATCGTAAATTGATTGAGGAGAGGAATCAGTTGGAAAGTTATACTGGAACTGAATGTATAACAAATGGCGATGATACCATCGAACAGCTACAAATAGCTGTAGTTGATGACAAAGGTTTAACCGAAGAAATAGATATAGAGCACGAGCAGAACATGGTCGTACAGGATACAGAATCGATAGAAAATGTTTCTTCTTCTGAAGACGAAGCAGAAGAGGTGatagaaataataaatgattccgAAGAAACTCTGAGTGTCCTGGAAGACGAACGGTTAGAGCAGAACACTGCGGCTCTTTTCAATGATGGGTTGTTCGAAATCGTAGAAGACACTGAAGAGCCTGATAATGACGCTGAAGAACCTGAAAGTGAAGCTGAAGATGATTGTATTGTACAAGAAATTGAAAACTCTGTAAAAGAAACCCAATCCGAAATAGAAAATAATCTGCTTAAGGAAACCGTCTATACGGTTGAGGATAGTATGGATGAAAGCAGCGGTGACGAAACGCGGCTGGGAACTGATGATTCCGAAGCAGCTAGTGAACCGTTAGAAACTGATTCCGATATCATGATGGCTAGCGATTCGGAAAGTGACACCTACGTCCAAACGAAGAGTTCACAGTATAAGTGCAAAATTTGCGCAGAAGAATTTCGCCACGTGGTGTTGGTTCAGCGTCATATTAAAAATCGACATCCTAGCCAATGGAAAAATTTCAAGTGTTATTACTACAAGAAGACGTTTCCATCGACCGCAAACCGTGATCGACACGTCCACTTCCACAGTCTTGACCATCATTTCAAATGTATGGACTGTGATCAGATGTTTGGTTCGCAAAAACTACTCGATCAACATACGGCTCGATTTCATCGGCCGTACTCAAAAACATTCACCACTATGCGGCTGAAATGTATGTACTGTGCTCGGGAGTTTGTTGAACGTAAATACTACAATCTACACTTGAAAATCTATCACAAACACCGCAAGGAACGCATCCGGGCTCTAACCGATGAGATACATCTTTGTGAAAGGTGTGTTGAAATATTCGAAACAAGAGAATTGTTGCTAGAGCACAAAAAACAAGTCCACCATTCCAGATTTAAACAGAAGCGTTTTGAATGTCCCCGTTGCGGTAAAGATTTGAAACTCAGTAGCTTACTGAAAATTCATCTCCTCACGGTCCATTTGGGTTATCTGCCCTATAAATGTCAGCTATGCAGTAAGAGATTTTCGACACGCTACGCATTGCTCAAGCACCATAGCGCCACTCATGCCAAAATGTTCAATTGCGTTGACTGCGGAGGTCAGTTCAAATCGAAACGTAAGCTGTACAAACATCAGGAACAATGTCTACAGGATGACGTAAAATTGTGTGACAACAGCAAAGCTGTTACTGCTCACAAAGATGAAATTGGTGGCTTCCAGGTCCAGTGTGGTCACTGTGGCGTGAATACTTAA
Protein Sequence
MDLSASSREDPFSADGIFSQQDLPLVPNESLESYCRLCLTTPDVEPLFPMGSDPNIYALELIGKYIGIDLTSQEDIRCAICRPCQLILDQFDLFRQNCLKVDIAIRRRRLGLDKVMNSEPLDDAEGDDGEEPAYIRLADRHYQCRLCSKVFPSLAVFMNHCKEYHPEESKVFKCKYCTKSFMTKTARLQHIRSHQPNNAQEMDMNSDRIQVCEKCMATFDSYKLLKIHLKEHSNDPKQDPLTCITCQKQFSRITILRNHILRVHLGKLPHVCKHCGISFGYSRQLLVHLQTEHGVIISGPELVNQSGQSLNEDDEQEEEIPKPTVEKPREMPPRPPTPHHTATHRKKSDYMCSECTVSCSTTEELRTHRKLHQDPTWWKCIHCRNFVKHQKMHLMKKHPSINADDVDAAFQLRYRCWLCRVYFKSLQQMEQHVSSRHEVELPNNQPELPKQPPVPEKQALVPVMAAPGPPPMMTAQPPMPIGAEHLPLLLSQLENGAWDYLRDMARSSEGTLTKSACWRSHSGHQERQDFRPLMKFCPETFHYLMLKGGYTRTSFKCSECNQMYASAASLEQHFARFHDTTSDDFALDRHHCLRCSSSFVEESYYNLHRWVYHTGVINHRQGTVPQGQQQMQWHKIGLQILFVCLICSQVTRNRSRHMRIRHDTLYNPRKHRFSIRYKCKRCLVMFKGSTTLLTHLQFCGDIDIKLRLSYRKLIEERNQLESYTGTECITNGDDTIEQLQIAVVDDKGLTEEIDIEHEQNMVVQDTESIENVSSSEDEAEEVIEIINDSEETLSVLEDERLEQNTAALFNDGLFEIVEDTEEPDNDAEEPESEAEDDCIVQEIENSVKETQSEIENNLLKETVYTVEDSMDESSGDETRLGTDDSEAASEPLETDSDIMMASDSESDTYVQTKSSQYKCKICAEEFRHVVLVQRHIKNRHPSQWKNFKCYYYKKTFPSTANRDRHVHFHSLDHHFKCMDCDQMFGSQKLLDQHTARFHRPYSKTFTTMRLKCMYCAREFVERKYYNLHLKIYHKHRKERIRALTDEIHLCERCVEIFETRELLLEHKKQVHHSRFKQKRFECPRCGKDLKLSSLLKIHLLTVHLGYLPYKCQLCSKRFSTRYALLKHHSATHAKMFNCVDCGGQFKSKRKLYKHQEQCLQDDVKLCDNSKAVTAHKDEIGGFQVQCGHCGVNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-