Mgen024580.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:341633994-341636258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.41 32 6.4 0.0 6 23 271 289 271 289 0.92 2 13 0.0017 0.13 14.0 0.5 2 20 300 318 299 320 0.94 3 13 5.4 4.2e+02 2.9 0.1 1 19 327 345 327 347 0.77 4 13 0.073 5.7 8.8 0.5 2 23 378 400 378 400 0.96 5 13 0.0037 0.29 12.9 1.0 1 21 410 430 410 431 0.94 6 13 0.27 21 7.0 0.1 1 22 438 461 438 464 0.90 7 13 0.0027 0.21 13.3 1.1 2 23 524 545 523 545 0.97 8 13 0.072 5.6 8.8 1.3 3 23 553 574 552 574 0.96 9 13 0.0027 0.21 13.3 0.1 1 23 584 607 584 607 0.96 10 13 0.0028 0.22 13.3 0.6 3 23 616 637 615 637 0.95 11 13 7.1e-05 0.0056 18.3 1.7 1 23 643 665 643 665 0.98 12 13 0.18 15 7.5 1.7 1 23 671 694 671 694 0.94 13 13 0.00052 0.041 15.5 0.1 1 23 700 722 700 722 0.97
Sequence Information
- Coding Sequence
- ATGGATTGTAAATCGGAATCTGACGATTTCTTTGTATGCCGTCTATGCCTACGTTCCGAGGTGGATGAATTAGTTTCCCTTTATTGCACGAGTTATGCTCAACAACAACTTGTTGTGGACATGATTGAAGATACCCTTAGATTAGGAGCATCTGATAAACCGCACGCCGACGATGGAATGCCTCAGTTTGTTTGTGGAGAGTGCGTTGAAAAGTTGAATGTGGCTTGTAGCTTTCGTAAAAAATGCATCCGTGTAAACAGCCTCCTCAGACAAGctatttttcaagaaaaaacaATCAATGACGTTGAAGTTTGTTGTCGGCTTTGCAACGAAACCGAGGCAGATGAGTTGATTTCTGTTTTTTGTATCTACGCCGAAAAGTACCAATTGATTGCTGACATAATAGTAGAAACTATTGGAATTGCTCGTCCAGCTCACACTGATAAACTTCCACAGAACATCTGTACCAAGTGTTTCGAGCAATTATCAACAATCTCCGTCTTTAGAGAATTGATGATCAGCTCAGATGCACAATCGAAGAATGTTTTGCCAAATTTCGTAAAAACCGAACCCATTGATTCGACTGGGTATGTTGATAATCCATTGAATCTAGATACGGGTGATTTGGTAGCTGTCAAACAACGGAAAAAGACAGCCCTCGGTAAATCTCAACAACAACATGAAACGCAAGATCCATTCATTTACTTGGACGCGCCGGAACTAGGATCGGATAGTTTGCGAGCCTTGTTTGTCACAATAGAGGATGAAGAATATTTTGAGCAGTTGCGTTTCAATGGTGTCGTATGCTGCTGTGGTTGGTTAGTGGAGAATGAGGAAGAGTTGAAAAAACATATGAAAGTTAGCCATATGGAGAAAACAAAAGTGCGGAGTCATGTCAAGTGCAATTATTGCAAAATGCGTTTTAATTATTCCACTGAATTGAATGAACATCAAGAGAATCGgaataaaaaacattatttccgGTGCAAGATTTGCAATATTCTGACAAAAGAAAGGCTAGCTCTTGAATTGCATTTCGAGTTTACTCGTTTCCATCCAATCCTTGATTCTTCAGAAGGGGAAAGGCTAGATTTTGAGGATAATGTGGAAACAATCCATACCGTAGATAACCGATGTTGTGGCTGTTCCAATACTTTCCCGGACGGCGAATCTCTTTTCGAGCACATCAGAGAAATTCATCAGGGTGATCTGGAAGAGTATCCCCAATTCTTTTGTGTGATGTGTCACAATAGTTTTTCGGATAAGCAGTTGTTGATGAAACATCAACTGGCGTACATTGGGACAAGAACATACGTTTGTCGAGAAACGGATTGTAAATACAGTACGGATCAGCGTCCGTTGATGAAGAAGCACATTGAGGTTGGAGTACATCAAGCACCGGATGGTTTGCGAAGAATTCAGAATGAATTAGAGATAACGGaatacttttgctgtttccGTGGTTGTTGCGAGATTAAATCTACAATGTCAGAACTGAAAGAACATTGCCAAACTGTTCATGGCGAGCAACAACTTGCGAATAGCCTTTTTACTGATGAACCAGAGAAAGTTTGCCCCCTTTGCAAACGTCACTTTCCGAAAGAGGATTCCTTTGATGCACACATTAAATCGCATACGCAATCGCGGAACAATGCGTGCAGCTTATGTAGTTCTAAATTCGCTACTCGTCAAAAGTTAAGGCAACACGAAAAACGTGTTCATTCAACAGATGCTAGGGTAATTCACGAGTTTCCCTGTCCACAGTGTGAGTCCATCTATGCCAGTAAGTTTACTTTGACGAAGCATATAGCGCGTGTTCACGAACAGCAATCATTCTCCGAAATATGCGAAATTTGCGGAAAAGGTTATCACAGCAAATCAGCCAAGAAACAGCACATGATCAATGCGCACGTAGAAGACAAGCCTTACAAATGTCACCTGTGCAAGCTCAGTTTCGGTTCCCGACCGCAGCTACAAAAACACCTCATCATCCACACCGACGATCGACCTTTTGCGTGCTCCTATTGTTCAAATACGTACCGTACTCCAGTAGACTGCAAAAGGCACGAACGTGCCATTCATCTGAACGATAAACCGTTCATTTGTGAAATATGCGCCGCCCGTTTCATCCGGAACCGAGACCTGCAACTGCACATGACAGTACATACTGGCAATAAACTGCATTGCTGCAACTTCGACGGTTGCAACTTTTCCACAAACATAGCCAAGAAGTTGAGAGATCATTATCAGGATGATCACTATTAA
- Protein Sequence
- MDCKSESDDFFVCRLCLRSEVDELVSLYCTSYAQQQLVVDMIEDTLRLGASDKPHADDGMPQFVCGECVEKLNVACSFRKKCIRVNSLLRQAIFQEKTINDVEVCCRLCNETEADELISVFCIYAEKYQLIADIIVETIGIARPAHTDKLPQNICTKCFEQLSTISVFRELMISSDAQSKNVLPNFVKTEPIDSTGYVDNPLNLDTGDLVAVKQRKKTALGKSQQQHETQDPFIYLDAPELGSDSLRALFVTIEDEEYFEQLRFNGVVCCCGWLVENEEELKKHMKVSHMEKTKVRSHVKCNYCKMRFNYSTELNEHQENRNKKHYFRCKICNILTKERLALELHFEFTRFHPILDSSEGERLDFEDNVETIHTVDNRCCGCSNTFPDGESLFEHIREIHQGDLEEYPQFFCVMCHNSFSDKQLLMKHQLAYIGTRTYVCRETDCKYSTDQRPLMKKHIEVGVHQAPDGLRRIQNELEITEYFCCFRGCCEIKSTMSELKEHCQTVHGEQQLANSLFTDEPEKVCPLCKRHFPKEDSFDAHIKSHTQSRNNACSLCSSKFATRQKLRQHEKRVHSTDARVIHEFPCPQCESIYASKFTLTKHIARVHEQQSFSEICEICGKGYHSKSAKKQHMINAHVEDKPYKCHLCKLSFGSRPQLQKHLIIHTDDRPFACSYCSNTYRTPVDCKRHERAIHLNDKPFICEICAARFIRNRDLQLHMTVHTGNKLHCCNFDGCNFSTNIAKKLRDHYQDDHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -