Mgen001649.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058071.2:32348025-32349924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.28 22 6.9 1.0 1 23 249 274 249 274 0.93 2 11 2.7 2.1e+02 3.9 1.7 2 12 279 289 278 301 0.87 3 11 0.0004 0.032 15.9 0.8 2 23 311 332 310 332 0.96 4 11 0.00027 0.021 16.5 1.6 2 23 337 359 336 359 0.94 5 11 0.017 1.3 10.8 3.5 1 23 365 387 365 387 0.99 6 11 0.0007 0.055 15.1 0.1 1 23 393 415 393 415 0.98 7 11 0.42 33 6.4 3.4 1 12 443 454 443 467 0.88 8 11 0.0011 0.084 14.6 0.4 2 23 471 492 470 492 0.95 9 11 0.00043 0.034 15.8 3.8 1 23 498 520 498 520 0.98 10 11 7.6e-05 0.006 18.2 1.5 1 23 526 548 526 549 0.95 11 11 0.0031 0.24 13.1 1.0 1 23 555 578 555 578 0.93
Sequence Information
- Coding Sequence
- ATGATTCTCAGTAAAATATGCCGTTTGTGCTTATCGGAAAAGTCGCGGATTAAATCCATCTTTAGGAATTACAAACGTGAACAATTGCTCAATTTCATCACCGAAGTTATTCGGCTGGATGTTAGTGAAGGAGATGGCCTTCCGGCCAACATCTGCACACCATGTGCTAACGCGTTGATACGCATGAAGGAAACTATAAGGGTTTTCCGAGAAAATGAGCGCAAACTGCGGGATAAAGTTCTAGTAGCCGAAGAATGCAATCTGGGATTACCAGAGAGCACGAAATCGGTTGAAACCAGGGATACGGATGATACTAGCGTAAATTTACACGACTTGCTGAAGGAAGATATCGTACTTTCGTTTCCCAATTTGAATACTGCTGAAGATGCAAACGAAAGTTCACTGGAGAGCTTAGAATCGTTGGATGCTAAACATTTAGTTGCCATAGATGCATTCGAGGAGCTGAAATCTACCACTGACAAGGATCATGATTCCGTTGAACCGGAAAGTGATTTAGACTATGAACCTGATAAACCCCGATCAAAATGTAAGCTGAAAGGTATCCGCAGGAGCAGGACAAATGCAATCAATAAAGGAAAAGGTAAACGAAAATCTCGGCCCTCCGGGGACGAACAGAATCGACCTAAAGTGAACGATCATAAGTGCTACATCTGTCGTAGTGAATCGATGGGATCGGCCAAAGCGCTACTGGAGCATTTGACCACTCATTTAGATCGTACGCCGTACACTTGCACGGAATGTAAAATGGTCACAGTCGTACTGAAAAGCGTTCGATCGTTGAATGTCCATATGAAGATGCATGCCCAGCCGATGAAATGTGAATACTGCGATAGGCGATATTGCGATGACCGGGCCCGTGATTTTCACGTTAAAACGTACCATTTGGGTGAAAGCGCTCCCTGTCCGTCAACGTGCGATCAGTGCGGGAAAGTATGCAAATCGATAGCCGCCCTCAAGAGCCACGTGAGAGATCATCGGTTGAGTCTTGAGTGTGACTATTGCGGTAAAATTTTCCATAGACGCAACAAATTGAGAGAACACGTAACTCGGGTGCACGAGAAAGCCGAGAAGTACGAATGTAGTATGTGTCATCGGGTAGTGCATTCCTTGGAAAGCTATAACTCGCATCTTAAAATGCACATGAGTGAGAAAACCTATGAGTGTGATTTATGTCCTATGAAATTTTACACGGCCGGAAATTTAGGTTTACATAAAAAGATTCATTCCGGGAACGCAAACTATAAACCTCATAAGGATTGGAGCGGACACTACACGGTTACTCAACAGCCGGGCCAGGACAGAGTGTACACGTGCAAACTGTGCGGCAAGTCGTACACGAAGACAGTGATGAAGATAAACAATCATCTTAAGAACCACTTCAAAGATATTAAATGCGACCGGTGCGAGTTGAAATTCGTGAACGAATCTCAACTGAAAACTCACTACGTAGTGCACACCGGCATCCGGCAGTACAAATGCGATTTTTGCGGGAAAGATTTTCTACACAAAAACAACCTCACCCAACATTTGAAACTGCATCGGAACGAACAAAACTATGCGTGTGAGTTTTGCGGGAAACTGTTCACGTACAAGGAAGGTATGAAGGCTCACATCCGGAATCATCATCTGCGAGAGAGTCCGTATGAGTGCACTTGCTGTCGTAGGAAGTTTGTGGATAACGCTTCCCTCACCCGGCACATAGCCGCCGAACATGAAGAGCCACCAAAGCAGGTTTTTTTAGAACCGCCACCCATGATGGGAACCGTACCGTCTCAGGTAGCACCGTTCGATTACTCCGAAATAACGTTTCCGTTTATTTAG
- Protein Sequence
- MILSKICRLCLSEKSRIKSIFRNYKREQLLNFITEVIRLDVSEGDGLPANICTPCANALIRMKETIRVFRENERKLRDKVLVAEECNLGLPESTKSVETRDTDDTSVNLHDLLKEDIVLSFPNLNTAEDANESSLESLESLDAKHLVAIDAFEELKSTTDKDHDSVEPESDLDYEPDKPRSKCKLKGIRRSRTNAINKGKGKRKSRPSGDEQNRPKVNDHKCYICRSESMGSAKALLEHLTTHLDRTPYTCTECKMVTVVLKSVRSLNVHMKMHAQPMKCEYCDRRYCDDRARDFHVKTYHLGESAPCPSTCDQCGKVCKSIAALKSHVRDHRLSLECDYCGKIFHRRNKLREHVTRVHEKAEKYECSMCHRVVHSLESYNSHLKMHMSEKTYECDLCPMKFYTAGNLGLHKKIHSGNANYKPHKDWSGHYTVTQQPGQDRVYTCKLCGKSYTKTVMKINNHLKNHFKDIKCDRCELKFVNESQLKTHYVVHTGIRQYKCDFCGKDFLHKNNLTQHLKLHRNEQNYACEFCGKLFTYKEGMKAHIRNHHLRESPYECTCCRRKFVDNASLTRHIAAEHEEPPKQVFLEPPPMMGTVPSQVAPFDYSEITFPFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -