Mgen013209.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:118140445-118142449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.029 2.2 10.1 2.8 1 20 118 137 118 139 0.93 2 11 0.00055 0.043 15.5 2.1 1 23 149 171 149 171 0.97 3 11 0.011 0.84 11.4 2.1 1 23 202 225 202 225 0.98 4 11 0.0019 0.15 13.8 0.4 1 23 373 396 373 396 0.94 5 11 0.0043 0.34 12.7 0.5 2 23 402 423 401 423 0.95 6 11 0.2 16 7.4 5.8 1 21 463 483 463 484 0.94 7 11 0.0001 0.0082 17.7 1.7 3 23 511 531 509 531 0.96 8 11 7.8e-07 6.1e-05 24.4 0.4 1 23 537 560 537 560 0.97 9 11 0.0088 0.69 11.7 6.1 1 23 566 589 566 589 0.97 10 11 0.00024 0.019 16.6 1.3 1 23 595 618 595 618 0.89 11 11 0.075 5.8 8.8 2.4 1 23 624 647 624 647 0.95
Sequence Information
- Coding Sequence
- ATGAATAACGATTGTTGTATTTGTTTCACACGCCAAATTGCATTAACTAAAGATAACTCATCGGGTCATTTAAGTACGTCTAAAAACGATatgttcaatattttcaaattacCAGAGGAGTTTCGAGCTCCACAATCGTTATGTGTTCAATGCTCAGAGAAGCTTTATCTGTCCTACacatttttcaatcaaattattCAGTGGGTAGAACAGCGGAAAATTTCGTTAGTAACCGCATCAAAACTCACAGATTCACCTATTGACAATTGCCCCAATAATTTGGATAATGATTCCGTTTCCAAATTACAGAGTCCTCTTAAGCTAGTTCATGGTGAATTGTCCGAGTACTGCCACTGTTGTGAATCATGTCGAAAGATTTTCAAAACCAATAGGGGATTGCAGCAACATTTGGTTTATTGTCAGTATTCGCAATCGAAACGAAACTTCAACTGTAAGCTGTGTAGTCGAGATTTTCAAACTAATGCCAACTACATTAATCATATGAAGTATCACCAAGATTTTATGTGTATTTTTTGTAACCGCGGTTGGATCACAGAAGTCAAACTTCTCGAACATGTCCAGAGTGTACATAGTGACCGTCTATTTCGTTGTGAGAAATGTTCAAGAACCGAAAGATTACGGAAAAATTTGAACCGTCATCGACGAGTGGCACACAATACTGAGCAAATCGAACTGTACTGTGGCCATTGCTCGTCTGGGGTTATATTCGGAAATATCGTAGCGTTGAACGAGCATATCCACACTGTACATAAATCTTTGGATCATCCAAGTGGTGTTTACGAGGAGCTGTTACATGAATCTCTTTTTCCAAAGGACTTAAGTTTAGTGTTAGAGACAGAATTCGAAAAATCTAATCAAGATGAGAATCAAGAAATGTTTCTCCGACATTTAAATCTTGTTAGAAATAGTGCCAATGCAACACACGATGCTACAGAAACGTCACAGAACCATAATAAAATGATTCTAGAGGAATTTTTGGATGAGGCTTTTGAGAATGATCAGATTTGGACCAAATATATTGAAGGAGGAGAAGAATATCTCATAGACAATTACGATTTTTATTTAGACGGATCATCTGGAAACAAGTTTAGTAAATATAAGTGTCCAAAATGTGAGGAAAACTTTGACAAACAGCAAAGACTGACAATACATTTGGCCGAAACTCATCAAGTTGCTTGTTTAATTTGTAATGATTGTGGGGCTAACTTCAATAAAATACGCAACTATAGAAGTCATCGTCAAGAGCATATGAAAGATAACACCCGGTTCAGAGAAAATATTATCCCGGAAGCCGAAGAGGCATTAGCCTTAGTACAGCAGGAAGAGAAGAAGTATGACATTCGTGAAACAGCCAGCAGTTATATCTACATCTGCAAATTATGCGATCGAAAGTTTCTCAAAAAATGTAATCTTGAAAAGCATCTATGCAAATTTTACTCCAGAAGTAAGCAGGTGGCTATGGAAACGGAGCACTTTATACCTGATTCAACTGTTTCCGAAAGCCTCTTCTGCACGTTGTGTGATAAAAAGTTCACTTCAGTTTCCGGATTGAAATACCACCTAAAACGACACACAGACGTTAAAGCATTTCCTTGTTTGTACTGCAACAAAACATTCACCGCAAATTCAAATCTAAACGCTCACATTCGTAATGTTCACTGTGAACATAAAAGCCATGTTTGCTCGGAATGTAACGCACGATTTGCTTGCAAGGATCATCTCACGAAACACATTCGTTCCAAGCATCGCCAGGAACGCCCTTTTCTATGCCCGGAGTGTCCGAAACGATACTTTCAGAAGTCTCATTTAAACGATCATGTTACTGCTACACATATGAGTTATAAGGCGTTCAGCTGTGAGTTATGCAGCACATCATATAGTTGCAGAGGATCTTTGAGACGTCACGTGGCGAGGACCcacaaaaataattaa
- Protein Sequence
- MNNDCCICFTRQIALTKDNSSGHLSTSKNDMFNIFKLPEEFRAPQSLCVQCSEKLYLSYTFFNQIIQWVEQRKISLVTASKLTDSPIDNCPNNLDNDSVSKLQSPLKLVHGELSEYCHCCESCRKIFKTNRGLQQHLVYCQYSQSKRNFNCKLCSRDFQTNANYINHMKYHQDFMCIFCNRGWITEVKLLEHVQSVHSDRLFRCEKCSRTERLRKNLNRHRRVAHNTEQIELYCGHCSSGVIFGNIVALNEHIHTVHKSLDHPSGVYEELLHESLFPKDLSLVLETEFEKSNQDENQEMFLRHLNLVRNSANATHDATETSQNHNKMILEEFLDEAFENDQIWTKYIEGGEEYLIDNYDFYLDGSSGNKFSKYKCPKCEENFDKQQRLTIHLAETHQVACLICNDCGANFNKIRNYRSHRQEHMKDNTRFRENIIPEAEEALALVQQEEKKYDIRETASSYIYICKLCDRKFLKKCNLEKHLCKFYSRSKQVAMETEHFIPDSTVSESLFCTLCDKKFTSVSGLKYHLKRHTDVKAFPCLYCNKTFTANSNLNAHIRNVHCEHKSHVCSECNARFACKDHLTKHIRSKHRQERPFLCPECPKRYFQKSHLNDHVTATHMSYKAFSCELCSTSYSCRGSLRRHVARTHKNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -