Basic Information

Insect: Malaya genurostris
Gene Symbol: -
Assembly: GCA_030247185.2
Location: CM058071.2:956037-958272[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0027 0.21 13.3 5.9 1 23 247 269 247 269 0.97

2 10 5.2e-06 0.00041 21.8 0.8 1 23 397 419 397 419 0.98

3 10 6.9e-06 0.00054 21.5 0.5 1 23 425 447 425 447 0.98

4 10 0.0003 0.023 16.3 0.5 1 23 453 475 453 475 0.99

5 10 6.4 5e+02 2.7 1.2 5 20 484 499 481 501 0.88

6 10 0.28 22 6.9 3.4 2 23 512 534 511 534 0.94

7 10 0.031 2.4 10.0 1.1 2 23 542 563 541 563 0.97

8 10 2.2e-06 0.00017 23.0 0.3 2 23 570 591 569 591 0.98

9 10 3.8e-07 3e-05 25.4 0.4 1 23 598 620 598 620 0.98

10 10 0.64 50 5.8 4.8 1 23 626 648 626 648 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0027	0.21	13.3	5.9	1	23	247	269	247	269	0.97
2	10	5.2e-06	0.00041	21.8	0.8	1	23	397	419	397	419	0.98
3	10	6.9e-06	0.00054	21.5	0.5	1	23	425	447	425	447	0.98
4	10	0.0003	0.023	16.3	0.5	1	23	453	475	453	475	0.99
5	10	6.4	5e+02	2.7	1.2	5	20	484	499	481	501	0.88
6	10	0.28	22	6.9	3.4	2	23	512	534	511	534	0.94
7	10	0.031	2.4	10.0	1.1	2	23	542	563	541	563	0.97
8	10	2.2e-06	0.00017	23.0	0.3	2	23	570	591	569	591	0.98
9	10	3.8e-07	3e-05	25.4	0.4	1	23	598	620	598	620	0.98
10	10	0.64	50	5.8	4.8	1	23	626	648	626	648	0.96

Sequence Information

Coding Sequence: ATGTCAAATTTTGACTATCAATGTTTTAACAACGATGATATCTGTCAACACCTGAAAACATCAAAAAGAAAAACTATTAGCGAGAACTTTTGTATCCCGGAATCCTTACTGCAGCATGCTTTGTCGGTTTGTATCATACCAACTCTACTAGATGGGAACTTAGGATATTCTAATGCACATTTCCCTAACAGGCAAGTAATTCCGGACACCAATGGAATAGAACAAATTTACATAGTTAAGTCGGAAAATGAACCCGAGAATCGAGAGGTTTCGGATTCTCTTGGAACGTCCGCATTAGACAATGAAGAAGTTGACCATATCAAACAAGAACCTCCCAGCGATGAGGAAGAAGCATGCGAGGATGGCATTCCTAGCTTTGGAATGCTGGATGTTATCATCAAAGAAGAATTGGAAGAACCAGGTTTGGAGGATGGTGGAGAAACAAGTACTAAGTCACGAAAAGATAGTAATAATTCAAATGTTTCAATGGATGGCTCTGCTAGAAGTTCCAGCGAGAGCGATTCTAGTTACACTAATTCCGACGAGTCGGACGATGAAGTCATACGACATACCCGATCACGCAAAGATACGCGTAGAACAAAAAATGTACGTTCTATACAGGATACCGAAGATAGCATGGACGAGTCTTTGAATGTAAGTAAGAAAAGAGGTCCGTACAAAAAGAAAGAGCAACCAACGGACAAAATCAAAGCGGTCAGACGAAAAGTTATTAAACGATTCGTTTGTCACTGTTGTCCGAAGAAATTTTCAACCCTATTCAATTTGGAACGGCACGAGAAAAGTCACATAACACAAGCAGAGAAGCAAAAACACAAAAAGAAGAATTTGTGTTTTGTCTGTCAGCAGGAAAACGAAACAAAGGACGCGTTACATGAACATTTGTGTCTGCATGCTGATATGCTACCGTACATGTGCCCGGATTGTGAAAAACCAGTAAAGGTTATTTCCGTTAGATTACTGAATAAACATTTTCAGTTACACAAGGAAATGCATACCGGTATTATCAAATGCGTTTATTGTTCAGCAAGATTTCACTCTCTTTCCGGCTGTCGACAGCATGAACGGGGACACGTTGAAGGGCAGCATATAAAGGAGGCACAAGCCAGAGCCGATTTAGAAAGCAAACGTCTTAACGTAAAAGTCATAATTGTAGATGGGTTGAAGAGGTATGAATGTGAATATTGTGGTAAGTCTTACTCGTTATTAGCTACACTTCGAAGACACACAAATTCACACACGATGGAAAAGGTTTATATGTGCAAAATGTGCGGAAAGATCTTCAATAAAGCCtcttctctgacattacacgaaaAAGTTCATTCGGATGTCAAACCATACAAGTGTGAGACTTGTGGCAAAGGATTCAAGGAGACAATAAGATTAATCGAACATCGgcGTATTCACACCGGCGAAAAACCATATCAATGTCATTGTGGAATGGCATTCCgtaaaaaatacattttaaagGAACATAAACACATTTGCGATTTACCCGAGGATATAAAAACTTGCGAGTGCCGTTTCTGCCAGCAGTCGTTTCCCTCGTATTTGGACATGGTGCATCATATTAGACAATTACACACACTCGGAATGCCAGAAACCAAATGCCAATATTGTACGTCCAAATTTAAAAACGTCATTCAGTTAATAATCCACGAACAGCGCCATGATCTACCGAACGTAATTAAATGCGATCAGTGCAATAGAATTTTCAAACAGGAAGCTAATCTTGAAGCGCACATTAAGACACACATTAACGAACCGGAAGCGTTTATATGCGACGTTTGCGGGAAaactttcaaccaaagtgttaaCTTGCGTATACACAAACGAATTCACAACGCAACACGATCGCATGTATGCGATCTTTGTCCGAAGAGTTTTCTGTGTTCGAGTACCATGCGCCGTCATCGGTTAACTCATTTTAACGGAAACAGTAAAAATTACATCCCAACGTTGGAGGACGAAGAGACAGAACCTGGTACAAGTCAGATTGAATGTGTCAAACAGAAGCCTCAGGCATCAACGGTTCATAATGAcaacatgtaa
Protein Sequence: MSNFDYQCFNNDDICQHLKTSKRKTISENFCIPESLLQHALSVCIIPTLLDGNLGYSNAHFPNRQVIPDTNGIEQIYIVKSENEPENREVSDSLGTSALDNEEVDHIKQEPPSDEEEACEDGIPSFGMLDVIIKEELEEPGLEDGGETSTKSRKDSNNSNVSMDGSARSSSESDSSYTNSDESDDEVIRHTRSRKDTRRTKNVRSIQDTEDSMDESLNVSKKRGPYKKKEQPTDKIKAVRRKVIKRFVCHCCPKKFSTLFNLERHEKSHITQAEKQKHKKKNLCFVCQQENETKDALHEHLCLHADMLPYMCPDCEKPVKVISVRLLNKHFQLHKEMHTGIIKCVYCSARFHSLSGCRQHERGHVEGQHIKEAQARADLESKRLNVKVIIVDGLKRYECEYCGKSYSLLATLRRHTNSHTMEKVYMCKMCGKIFNKASSLTLHEKVHSDVKPYKCETCGKGFKETIRLIEHRRIHTGEKPYQCHCGMAFRKKYILKEHKHICDLPEDIKTCECRFCQQSFPSYLDMVHHIRQLHTLGMPETKCQYCTSKFKNVIQLIIHEQRHDLPNVIKCDQCNRIFKQEANLEAHIKTHINEPEAFICDVCGKTFNQSVNLRIHKRIHNATRSHVCDLCPKSFLCSSTMRRHRLTHFNGNSKNYIPTLEDEETEPGTSQIECVKQKPQASTVHNDNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01462545;
90% Identity: -
80% Identity: -