Mgen026933.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058073.1:42656143-42658263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.03 2.4 10.0 0.3 2 23 299 320 299 320 0.97 2 13 0.0036 0.28 12.9 0.3 2 23 326 347 325 347 0.96 3 13 1.7 1.3e+02 4.5 1.8 2 23 355 377 354 377 0.85 4 13 0.63 49 5.9 3.7 1 23 396 418 396 418 0.90 5 13 0.00023 0.018 16.7 3.2 1 23 424 446 424 446 0.97 6 13 1.7e-06 0.00013 23.4 2.1 1 23 452 474 452 474 0.99 7 13 0.00046 0.036 15.7 1.2 1 23 480 503 480 503 0.95 8 13 0.73 58 5.6 4.7 3 23 523 543 522 544 0.92 9 13 0.026 2 10.2 0.9 1 23 552 574 552 574 0.98 10 13 0.0049 0.39 12.5 0.7 1 20 578 597 578 600 0.89 11 13 0.00023 0.018 16.7 2.7 1 23 606 628 606 628 0.96 12 13 3.4e-05 0.0026 19.3 5.6 1 23 634 656 634 656 0.98 13 13 1e-05 0.00082 20.9 2.9 1 21 662 682 662 683 0.95
Sequence Information
- Coding Sequence
- ATGCCGTGTGTAGTTCCCTATTGTGATGAGGAAGGGCAAAGTTTCAGTTTACGATTTCCTCGAAGTCATTTCTTGTATGAACGCTGGATGAAAGCGATCGAATTGGGTTCAGGCTCAGTCCTTTCGGATGATATTGATCCATTGGAAGCGCAAATCTGCCAACAACATTTCGATGAGGTCGATCAGTATAGTGAACCAAGAAACTTCAGGAATCCGAGCTTaggtaaaaatgtgcacctgtcCAGCTGCAAGTTGTGTTTACGTTTTGACTTTGCCGAGCGTGTAGTGCCCATTTGCAAAGAGCATATGCTCGGTGATGTTTCGATTGAAGATCTGcttaaaagttttttaaaaattcatttcgacAACTATTCTGGGTACCTAAATGGCATTTGCGAGGCGTGTGTTGCTCGGTTGGATATTATTGCGACCCTTcgtatgcagtttattcaaaatTCGAGGTGCTTGCAAAAGATGGTGGTTTCCATTAAAGAGGAAAATCGACTGCGGTATCGAAAACCACAAGAATCGATGATGCTCAAAGGAAACATTTCAGTAACGGAAGGAGAAACACGACCAGAATCGCCAGAGCGAAAAACTCTACAAAATTTAGTAATTGAGGTAGAAGGAACATGGATGAAAacggaaaaaatgattaatgaAACAACAACTTTGATGAATACTGAGTGTATAAGCGCTCGTGTTTCGGAGAAAATTAGTAATTCTACTAATGAGAAAGATAAATCACAAATAATAAAACAGAGGAAAATCAAAGTTCAAAACGAAACGGAGTGCGAAAAAAGTGCAAACGAAAAACGCCCAGTTGGAAGACCACGAATAAAATCAAGCAAGCAATTAAAGGAGAAAGTACATCTCAAAGGAATGACAGAACGTAAGTGCTACATGTGCGTCCAATTATTTCAAACATCGGAAGAACTATTTGCACACATGGTAACCCATGTTGATCATGATTTAACCTGCGATGTGTGTAGTGAGATCTTCCCGAACCTTACTAAGTACAACCGACATCTGGCAAAACATGATCCCATTGAACGACCTATAAAATGTGATCACTGTGAGCTTAGATTCACTGATGGGCTAGGTAAACGACGACATGAAAAACAACGCCATGATGTCGATCACTCGGTTACTGTATTTAGCTCAGCTAACAAGCGAAAAGGGAAATTCACTTGTCAACATTGTGGAAAGCAGTGCTTATCGTTGTCATTTCTCAAGGAACATGAAGACGCTCATGCTGGCATTAAAAGACATGAGTGCAAATCATGTGGTCGTTTGTTTGCCAACAAAAACAATCTCGAACGTCACCATCTCATCCACACCTCAGAAAAACCTTATAAATGTCACATTTGCGGCAAGGCTTTCCGACAGTCTCCCATGTATAAGGACCATTTGCGGTTGCACTCCGGTGAAACGCCTTACGCGTGTAACGTTTGCAACTTGCGATTTACTTCCACCACCCTGCTGCGAAAGCACAAAATTCGATTACACGGAGCAATTGTTGCCTCTTCTAGTAACAGCTTATCTGTTATTCGACCTCACAATTATTGCCGGTTCTGCATGAACTCTTTCAAACGACACTCGCTGCTTATTGAACACATCGAACGGCACCATCCATATGAAGAAATCGAGTACTTCCGTTGTTCCACATGCGAACAGCAGTTTGTAGTAAAGCAAGCATTCGATCTTCATCTGCgtaatcatgaaaaaaatttccagtgtgaattcTGTGACAAAGCCTTCAGTACGCTGCAGGCTCTAAAATTTCACCAACCCATTCATGACGGCACCCGAGGTTATTCTTGCAAAACCTGCTTGAAATCTTTTACACACATAGCCAATCTGAAGCGCCACGAGCTGTTGCATTTGGGAATCAAACGCCACGAATGCGATTTCTGTGGAAAACGCTTTGCGCAATCCAATCAGTTGCATACGCACCGGAGAACACATACTGGAGAAAAACCATATGAGTGTCAGAAATGCGGGAAGCGTTTTGCAGACAACAGTACGCTTTGTAAACACAGAAAAAGCGTGTGCAAAGCTGTGTGA
- Protein Sequence
- MPCVVPYCDEEGQSFSLRFPRSHFLYERWMKAIELGSGSVLSDDIDPLEAQICQQHFDEVDQYSEPRNFRNPSLGKNVHLSSCKLCLRFDFAERVVPICKEHMLGDVSIEDLLKSFLKIHFDNYSGYLNGICEACVARLDIIATLRMQFIQNSRCLQKMVVSIKEENRLRYRKPQESMMLKGNISVTEGETRPESPERKTLQNLVIEVEGTWMKTEKMINETTTLMNTECISARVSEKISNSTNEKDKSQIIKQRKIKVQNETECEKSANEKRPVGRPRIKSSKQLKEKVHLKGMTERKCYMCVQLFQTSEELFAHMVTHVDHDLTCDVCSEIFPNLTKYNRHLAKHDPIERPIKCDHCELRFTDGLGKRRHEKQRHDVDHSVTVFSSANKRKGKFTCQHCGKQCLSLSFLKEHEDAHAGIKRHECKSCGRLFANKNNLERHHLIHTSEKPYKCHICGKAFRQSPMYKDHLRLHSGETPYACNVCNLRFTSTTLLRKHKIRLHGAIVASSSNSLSVIRPHNYCRFCMNSFKRHSLLIEHIERHHPYEEIEYFRCSTCEQQFVVKQAFDLHLRNHEKNFQCEFCDKAFSTLQALKFHQPIHDGTRGYSCKTCLKSFTHIANLKRHELLHLGIKRHECDFCGKRFAQSNQLHTHRRTHTGEKPYECQKCGKRFADNSTLCKHRKSVCKAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -