Mgen024120.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:331480666-331483694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.5e-05 0.0035 18.9 0.6 2 23 104 125 103 125 0.96 2 18 0.0065 0.51 12.1 3.8 1 23 131 153 131 153 0.98 3 18 0.03 2.3 10.0 4.0 1 23 159 181 159 181 0.84 4 18 0.18 14 7.6 0.1 2 23 187 209 186 209 0.95 5 18 0.00036 0.028 16.1 5.1 1 23 215 237 215 237 0.98 6 18 0.00044 0.035 15.8 0.4 2 23 241 262 241 262 0.97 7 18 0.0015 0.12 14.1 0.9 1 20 269 288 269 290 0.94 8 18 0.36 28 6.6 5.1 1 23 295 318 295 318 0.97 9 18 0.00046 0.036 15.7 0.1 2 21 606 625 605 628 0.88 10 18 0.0054 0.42 12.3 0.0 1 23 638 660 638 660 0.95 11 18 9.2e-05 0.0072 17.9 2.5 1 23 666 689 666 689 0.96 12 18 3.4e-05 0.0026 19.3 0.6 2 23 695 716 694 716 0.96 13 18 0.063 4.9 9.0 1.3 1 23 722 744 722 744 0.91 14 18 5.3e-05 0.0041 18.7 1.8 1 23 749 771 749 771 0.98 15 18 8.5e-05 0.0067 18.0 0.6 1 23 777 799 777 799 0.98 16 18 0.0033 0.26 13.0 0.3 2 23 806 828 805 828 0.95 17 18 1.8e-05 0.0014 20.2 1.4 1 23 841 863 841 863 0.94 18 18 4.3 3.4e+02 3.2 6.2 1 23 869 893 869 893 0.94
Sequence Information
- Coding Sequence
- ATGATGCGAGGGCGTTCGGTAGCATTACAGTTATCAGGTCGTGCTAGGAGCTGTTCATCTACCCGACAAAATGCTACAGAACTAAAGAAAGCTGAGACCTATGGTACGGACCAAGAGCAACCACGTAAAGGCCGTGGTAGAGGACGACCACGACATCCAAGGCCTGAAATTTTGATTCCTGATAGGCCTCCAGATGCAAATGAAGATCAAAATCTACCAAGTAAAACTGCCCAGCCAATGTGTGAGAAAACGGCAAACACAAAAAAGAATATCACTGGTCGTCATAAGGACGATACCAAATCTAATGTAACATGTGAGATCTGCggaaagtttttcaagtttcgaGCTACCCTAAAGCAGCATGAACAGATTCACTACGGAATTAAAGAATTCGAATGTGAAGTATGCCACACGCGATTTCTGCACAAGGGAACCCTAAAGGTTCATCTTCGGCTACACACAGGAGAAATGCCTTACAAATGTCCGCACTGTCCGAAACGGTTTCGAGGGCAAACAGCTCTGGATTGTCATGTGTTTAGGCACACAAAACAGGGCACAAAATGTCCGCAATGTTCTTCTATTTTTGCCACACCTTCGATTGTGAAACAGCACATTCGCGAAGTCCACACGACAGAACGTTCACACACTTGCCAGATTTGCGGTGTGACTTATAAGCATCGAAAAAGTCTTCGATTGCATCTACGCAACCATCAGAAACGAGTTTGTCCCGAGTGTGGCAAAGTTTTTCACAGTATATATGCAATGATGACACACCGGAAGGTTCACGCGCAGGATCACTTCCAGTTCAAATGTACTTATTGTGATCGAAAGTTTGAGAAGGAGGTTGAATTACAGTCGCATAATAAACTAAGATGGAGAGCATATCAGTGCGATATGTGCTGCCATAGTTTTAACAAGGCTGAATATTTGATCAATCACAACCGACGGAATCACTGGAAGGAAATGGGCCTTGAACAGTTGAAGGTTGCGCCTCCGAAGAACGGTTGGAACAGAAAAGGtgttccaaaaataaaaaaagtcgaAAAATCAGTAgcaaatgaaaatttaattacgGAAGTATGCCAGCGAACCGATGGCCCCTTGGAAAATAACCAGTCGTCAGATGTGACTATGCCGGCAGGCTATCAAAATGACGTTATTATTGAGAAGCGACCAGCAGAGACTACAGCAGAAATCAAACCGGCCGGTCCAATCGAGCATAATAACGAATTTGATTGTAAAGTTGTAGAGACATTTGAAAAACAAGAATCTGATTTCGATTATGATTGTACTGCAAATgatgacctgggatttgctggGAACTCAGATACAGATCAAATCTCATTCGACGATATTAAATTTGAAAGTGAAACAACGCAAATACAACAACCTgattcgattttcttcaaagCAGAAATCAACGAAAAAGACGATGTATTTAACACAGAAGAACCAGTTTTAGATGAAGTCACTGATACTAAAGAAGAATGCCAGGAAAAAGATGACGTGTCTGAGAGTGATGATGATGTGCCACTAGCGAACTTACTTTCAAAGAACAGTAGCAAAGGAATTCCTACGATTTCCAAAGATAAGAAAACTAAGCGTAGGAGAGGAGTTACTGACACAACAAAAGAAAAGACTCCACAAATTAAAAATGAAGTATTCAATGAGACTGAAGAAGACAGACTAAGTGGCGAAGCAGAAAATCATTCCATAAAAACAAACCTTGAAATTAAAGCCGGAAAGCAGAAGCGACGTTCTCGGCTTGAAACAGGAAACCAATCGcagaaagaaacgaaaattaaagcGGGACTCTACTGTCCTTACTGCGGTGAATCTTTTGCGGGGCGAACATCACTCAAGCAGCATAAGGTGGAAGTACATCCAGATATGAAACCGCATAAGGGGCCTTTTATTTGTGAAGTCTGTGGCAAATCGTACGCCACGGTGGCATCGATGGTAGTTCATCGGGGAAGTCATGCCGAGTATCAACGGTTCAAGTGTGACGAGTGTCCCAAAGCGTTTACCTACCGGTGCTATCTGGAAAATCACAAACGAGCCGAGCATTTGCACGAACGACTGATTTGTCCGCTCTGCGGGAAACAGTTTAAGTACAGTCAGGATCTGAAAGTGCACACCAAACAGCACGAGGATGACAAACCGTTCAAGTGTGACTTGTGTCCATCGGTGTTTCGATACCCAAGTGCCCTACGTTGCCATAAGGCACTTCACGTGGAGACTGTTTTTACGTGCGACATTTGCCAAAAACAGTTCAAATACGCCAATAGTTTACGGGTCCACAAGCGTTTGCACACCGGTGTCAAGCGCTTCCGATGTGAAATTTGTGATCGAGAGTTCCACACGAAAGCTCCGTTGGTACGGCATTTGGCGACTCATTCGGTGGAACGCGAAATGAAGTGCGTTGTTTGCGATAAGATATTCTATAAGAAAATAGAACTTGTCATTCATCAGACAAAGGAACATCCGAACAATCCTGTTAtaggaaaaaccatcaaaattCACGTTTGTCCGGTGTGTGGGCAGGAGTTTACCAAGAAAAGTAATTTAAAATCACACTCGTACATCCACGGTGATGTGTACAAGTACAAGTGCGACCTGTGTGAAGATCAAAAGTTTAAACAACATGCTGGATTACGGCATCATTTAACGCACTTCCATAAGCTCGAGATACGCAAACGGCAGCCAAAGGATGCAAGCATTTCGAAAACAAACGACGAAGATGTTTGCTCCGCAATAACCGCCACCCTGGCACCGGCTGTTAGTGTTTTACACAATGGAATTGAGTTTATGGTGCAGCGGGTTGAGTGTGAATAG
- Protein Sequence
- MMRGRSVALQLSGRARSCSSTRQNATELKKAETYGTDQEQPRKGRGRGRPRHPRPEILIPDRPPDANEDQNLPSKTAQPMCEKTANTKKNITGRHKDDTKSNVTCEICGKFFKFRATLKQHEQIHYGIKEFECEVCHTRFLHKGTLKVHLRLHTGEMPYKCPHCPKRFRGQTALDCHVFRHTKQGTKCPQCSSIFATPSIVKQHIREVHTTERSHTCQICGVTYKHRKSLRLHLRNHQKRVCPECGKVFHSIYAMMTHRKVHAQDHFQFKCTYCDRKFEKEVELQSHNKLRWRAYQCDMCCHSFNKAEYLINHNRRNHWKEMGLEQLKVAPPKNGWNRKGVPKIKKVEKSVANENLITEVCQRTDGPLENNQSSDVTMPAGYQNDVIIEKRPAETTAEIKPAGPIEHNNEFDCKVVETFEKQESDFDYDCTANDDLGFAGNSDTDQISFDDIKFESETTQIQQPDSIFFKAEINEKDDVFNTEEPVLDEVTDTKEECQEKDDVSESDDDVPLANLLSKNSSKGIPTISKDKKTKRRRGVTDTTKEKTPQIKNEVFNETEEDRLSGEAENHSIKTNLEIKAGKQKRRSRLETGNQSQKETKIKAGLYCPYCGESFAGRTSLKQHKVEVHPDMKPHKGPFICEVCGKSYATVASMVVHRGSHAEYQRFKCDECPKAFTYRCYLENHKRAEHLHERLICPLCGKQFKYSQDLKVHTKQHEDDKPFKCDLCPSVFRYPSALRCHKALHVETVFTCDICQKQFKYANSLRVHKRLHTGVKRFRCEICDREFHTKAPLVRHLATHSVEREMKCVVCDKIFYKKIELVIHQTKEHPNNPVIGKTIKIHVCPVCGQEFTKKSNLKSHSYIHGDVYKYKCDLCEDQKFKQHAGLRHHLTHFHKLEIRKRQPKDASISKTNDEDVCSAITATLAPAVSVLHNGIEFMVQRVECE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -