Mgen009320.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:25390793-25397813[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2e-06 9.5e-05 23.8 3.4 3 23 194 214 193 214 0.98 2 14 2.4e-06 0.00019 22.9 2.9 2 23 223 244 222 244 0.97 3 14 1.4 1.1e+02 4.7 3.2 1 23 248 273 248 273 0.78 4 14 0.0031 0.25 13.1 0.2 3 23 310 330 309 330 0.97 5 14 0.33 26 6.7 0.3 1 20 408 427 408 431 0.84 6 14 0.0017 0.13 13.9 0.9 3 21 439 457 437 458 0.94 7 14 2.7 2.1e+02 3.9 1.8 2 23 468 490 467 490 0.90 8 14 2.2e-05 0.0017 19.9 3.9 1 23 509 531 509 531 0.96 9 14 3e-08 2.4e-06 28.9 2.3 1 23 538 560 538 560 0.99 10 14 1.6e-07 1.3e-05 26.6 1.0 1 23 573 595 573 595 0.96 11 14 1.7e-06 0.00014 23.3 0.8 1 23 601 623 601 623 0.99 12 14 1.2e-05 0.00092 20.7 2.8 2 23 630 651 629 651 0.96 13 14 1e-06 8e-05 24.1 0.9 1 23 657 679 657 679 0.99 14 14 0.0012 0.096 14.4 0.1 1 23 685 709 685 709 0.93
Sequence Information
- Coding Sequence
- ATGGATGCCATGGAAGAAAACACTTCCTATGATATGACGAAGATTTGTCGATCCTGTCGGAAGGACGGACAAATGTTACAATCTATCTTCCATTCGTCTGGGGATGACGGTATTGCACTGCATGAAATGCTTGTCGAGTGTACGTCTATCCAGattCATTTTAACGATGGGATGCCTCAACATGTCTGTTCCAACTGCGCAAGAGATATCAACACGGTGTACAACTTTCGGAAGCGTTACGAGGAAAGCGACCGATTGTTACGCGAATATGTGTCACAACAGCTAAGCTCCAGCAATGTTAAGGTAGAAGAAATCGATATTAAATCGGAACAGCTGGCTTTCTACGATGTCAGTATGCATCCGTCCGAGCATGATGCGCTACAggctgatgatgacgatgacgatggGTTCGATGGACATTTGGAGTACGGTGAAACGGCATTCGTCTCGGCCGAACTGGCTGATGACAGCGATGAACAAGCGAACGAAACACTGAGACAGTTCTCTCAACCTAACCATGAATTTGTGGCCATTGATGTGAATCCGTCAAAACTGTTGGATGTGAAAAGAAACAAATTGTGTATGATATGCAATAAAGCCTTTACTCGGACAGATCATTTGACGCGGCACATGAGAACGCATATCGGTGGTCCCGAGGGACTGATAAAGTGTTCAATTTGTAATCGAGGATTCACCCGGAAAGACCACATGATGCGCCATATGAAGATACATAGCAAGGATTTTAATTGTGAATTTTGTGAGAGGAAATTTTCAACGCTGGATTACAGCGAGTACAAAACGCATATGGCTACGGAGCACCCGGGGAAGGAATTACTGCATGTTCGGAAATATAGGAAGCGTAAGCTCAGCTCGGACACACCAATCACAGCGGAAATGGTTTACGATAAAGGAAAAATGGAAGCCATTTGTCGGCTTTGTGATGCCACTTTTGACCGAATTGTAGAACTGCGAAATCATTTGAAAGTACACATCGATCCGACATCGTTCGCCACCGTCAACATCCAAACGAAACCGTACCTGTTTGAGGAAGGACGTGTCGTGGACAACTTCCTGGAAAATATCATACATCGCGTCTACAATTGGGAAGTGAATCGGTTCTATCAGATAGTAGAACCAGACGGCGAAGAACTGGGACTGAGTGATTCGGATTCAGAACCAGAAGAAGGAGAACCGGCTATAGACGGAATTATTCGACGCGAGCATTCCTGTGCTGTTTGTCAGCAAAGTTTTAGTAGAATTAAAATGATCATGGAACACGCCATCGACCAGCACAAACCGGAAGAGCTTCTGGCTTGTACGCACTGTTCACGAGGTTTTCCGAACAAAGCCTTACTGTTGCGTCACCTGAAGCACCAGTGTGAGAATCACGACAAGAAGATTCACTGCCcgttttgcaacgaaagatttaTGTGGCAAACCAGCATGAATAAGCATGCTCAGCAGAAGCACAAACCCACGAAACCTTTGCTGCAGCGGCCGGATGACGAAACCGaggaaaaaaatcatatctgtCAAATATGCAACAAGAGCTTCATCCGACGGCAGCATCTGGATCGCCACATGAGCATTCACATCCCGGACGAGAAGAAATTCAAATGTACCGAATGCAACAAAGCATTCAACCGGAAGGACAATTTGCGGACGCACATGAAGATCCACTATCGGGATCCGGCGGATGCGATACCGAAACAGGACTTCCTATGCACTCTGTGCGGGCGAGCTTTCTCCAAGTCGTCGAATCTGACGGTGCACATGCGGAGGCACACCGGCGAGCGGCCGTACAAGTGCGACATTTGCGATAAGGGATTTCCACGGTCCCTGGATTTGCAATACCATCGCAGAACGCACACCGGTGAGAAGCCATGTATTTGCAAAGTTTGCGGAGTTGGTTTCACGAGGTCACACAAACTTATCGTACACATGAGAACTCACACTGGAGACAGACCGTACAAGTGCACTTACTGCGATCGCGCCTTCGCCCAGTCCAACGATCTAACGCTGCACGTCCGACGGCATacgggcgaaaaaccgtacgcCTGCGGGATATGTGACGAACGATTCATCCAGGGAACCGCCCTCCGAAGCCACCAGCAAACTACCGGACATTTCAGGGACGGTGACACCGGGCAATACTCTGGTCGGACCGGGCCACGAAAATCGAAACTGGCCCGGGAACCGTCGTTGACCGTACTTTAG
- Protein Sequence
- MDAMEENTSYDMTKICRSCRKDGQMLQSIFHSSGDDGIALHEMLVECTSIQIHFNDGMPQHVCSNCARDINTVYNFRKRYEESDRLLREYVSQQLSSSNVKVEEIDIKSEQLAFYDVSMHPSEHDALQADDDDDDGFDGHLEYGETAFVSAELADDSDEQANETLRQFSQPNHEFVAIDVNPSKLLDVKRNKLCMICNKAFTRTDHLTRHMRTHIGGPEGLIKCSICNRGFTRKDHMMRHMKIHSKDFNCEFCERKFSTLDYSEYKTHMATEHPGKELLHVRKYRKRKLSSDTPITAEMVYDKGKMEAICRLCDATFDRIVELRNHLKVHIDPTSFATVNIQTKPYLFEEGRVVDNFLENIIHRVYNWEVNRFYQIVEPDGEELGLSDSDSEPEEGEPAIDGIIRREHSCAVCQQSFSRIKMIMEHAIDQHKPEELLACTHCSRGFPNKALLLRHLKHQCENHDKKIHCPFCNERFMWQTSMNKHAQQKHKPTKPLLQRPDDETEEKNHICQICNKSFIRRQHLDRHMSIHIPDEKKFKCTECNKAFNRKDNLRTHMKIHYRDPADAIPKQDFLCTLCGRAFSKSSNLTVHMRRHTGERPYKCDICDKGFPRSLDLQYHRRTHTGEKPCICKVCGVGFTRSHKLIVHMRTHTGDRPYKCTYCDRAFAQSNDLTLHVRRHTGEKPYACGICDERFIQGTALRSHQQTTGHFRDGDTGQYSGRTGPRKSKLAREPSLTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462292;
- 90% Identity
- -
- 80% Identity
- -