Mgen024118.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:331468105-331471477[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1 79 5.2 6.1 1 21 38 58 38 61 0.86 2 21 0.0011 0.088 14.5 4.1 1 23 76 98 76 98 0.98 3 21 0.025 2 10.3 0.9 1 23 106 128 106 128 0.99 4 21 0.014 1.1 11.1 0.1 2 23 139 161 138 161 0.93 5 21 1.6e-06 0.00013 23.4 0.4 1 23 167 189 167 189 0.99 6 21 0.00088 0.069 14.8 0.1 1 20 194 213 194 215 0.93 7 21 0.00018 0.014 17.0 0.4 3 23 225 246 223 246 0.94 8 21 1.9e-05 0.0015 20.1 3.6 1 23 251 273 251 273 0.98 9 21 0.0038 0.29 12.8 3.0 1 23 277 300 277 300 0.97 10 21 0.0013 0.099 14.3 3.2 1 23 550 573 550 573 0.95 11 21 8.4e-05 0.0066 18.0 3.9 1 23 589 612 589 612 0.94 12 21 0.21 16 7.4 1.6 2 19 623 640 623 642 0.94 13 21 2.5 1.9e+02 4.0 5.0 1 23 654 676 654 676 0.91 14 21 0.0069 0.54 12.0 0.7 1 23 682 705 682 705 0.96 15 21 3.1e-06 0.00025 22.5 0.1 1 23 710 732 710 732 0.98 16 21 3.9e-06 0.0003 22.2 0.4 1 23 738 761 738 761 0.98 17 21 0.0053 0.42 12.4 2.0 3 23 777 797 775 797 0.97 18 21 0.0021 0.16 13.6 1.6 1 23 803 825 803 825 0.98 19 21 0.19 15 7.5 0.8 1 23 831 854 831 854 0.91 20 21 0.0021 0.16 13.6 0.7 1 23 866 888 866 888 0.94 21 21 0.0078 0.61 11.8 2.5 2 23 895 916 894 917 0.94
Sequence Information
- Coding Sequence
- ATGAGTGAAATTACAGATTCATCGTCGACTAAAGAGGATGAGAAAATTTCACGCGATGTCTCCGAGGATGATTCTTTCGATATTCGCTTGAGCAGTGacgggATAAAGTCTTTCCACTGTAAATTTTGCAATAAATCTTATAGTTCGAAACAGTTGTGCAAACGTCACGCTACTGCCATCCACAAAAAGTGTGATTCCAGTCGAACAAGCGGAAATATCGAACAATATCACTGTCAACAGTGCGACATGGTTTTCAAAagtaagcatgcttttgtggcaCATGAAAAGACACATAGCGAAGATGACAATAAACAGTATCGATGCGAGACATGTTCAGTGATTCTCAAAACATTGGCCAGCTACAAGCAGCACTTGAATAAACATTTTGgtataaaaaatgaaaagaacACACTACCGTGCGAAAACTGTGATGCAGTTTTCACGAGTCGCGAAGGTAGAAGGGTGCACATGATTTTGAAACACAGTGCTGGACAGACATACAAATGCCAGGAGTGTCCGATGATATTTGCTCGCAAAGGAAATCTACGACTGCACATGACTACGCATGGGATAAGACCGCATGTATGCAGTGTCTGTGGAAAGTCCTACGCTAGGATCGAAAGCCTGCGAACACATGAACAAGGTTGTGCGAACGGAAAAACGGGATTGTTTTGTGAAAAGTGTGGACAACGGTTCCGAAAGCTCGAGTTGCTAGAGAAACATATTCAGCTTGGTCATCCGGAAAAGGAACATCAGTGCAACTATTGTGGCCAGAGTTTCGAGAGTAAGCGTGCCCTTAGTCATCACGTGCGAGTACATGAAGGCAAATTCCGGTGTACGCATTGTTCGCTGCAATTTGTAACTGAGAAAGCATTACAAAACCACGAAAAGAGTCGACATTGGGAGATTTTAGGTATAGAGCGAGTGATTGGCAAGCAAGGTCGGCGAAGAGACGGAACCGATAGACCAAAGGAGCCAAAGGCACGTGTTAGGAGAAACAAATATAATCCGTTTCTGGGTTTAGAACACTTAGCGCAATTGACAGAGAAAATGGATCACAAATCGAAATCTGAATCTGATATTCAAACTCAGTCTGCTGTTCTGGAAGATACTCATATAAGGACTTCAAATtacaacatagaaaacactaatTTCAGTATGATAGACAGTGATCCAATTGATAAAAACTCTGTGCATACCGTGGCGACAATAATCGAAGATGCCAATCATGATTTGGAAGGTAATGCTGATAATACTGGCTGTGAGAGAATTTCAAATGATAATGTTGTAACTGACGATATCAAAGaaactataatcgaaaaaagaaCTTTACTGGATGAAGACACAACACTGGATTGTGAACAAAACATGATCGAAAATCCTGCTATAAGCGTGAAAGAGGAAAATGAACAACTTATTTCAGATTATGAAGATGTCAGAGAATTTGACGGAAACAACTCGGAGTCTGATGGTCACGAAAATGACTGGATAAATGAGGCGAATGAACAAGACCTCATaactgaaataaaaatagaacacAATCCAACAGTTGAGCTTTCGACTAAGATACCTAATGCAAAGATCAAGGCAAAACGAAAAGCTCGTCGGAAAGCCAAACCAGTCAAGAAACAGTCACACCCGAAAAAGTTCAATTGCGACGATTGCGATAAAACGTTTGTTCATCATTACTGGCTGGGTGTTCATCGAGAAAAAAGGCACGGTGTTCGGAATGAGGACGATGTTCTTCCTAAAAAGAACCGGGTACATATTTGCAATCAGTGTGATAAAAGTTTCAGCGACTGGCGTAATTTATTGTATCACTACAAACATGTTCACAAGATTGCAATCCAGGACAGTGAAGTGGAAAGATGCAGATCGTGCAAAAGAAGGTTTATCAACGCAGACGAACTACAGTTGCATTCGTGCTTCAAGGGCATTTTAGTGAATCGAAAACCTCAGTATAAATGTGAGATATgtgaaaaacaatattttagtcAGCATGGTTTGGATTGTCATCGGTCCTCGCACCCGGAGTACCATAAGTTCAATTGTGATGTTTGTCAGAAACCGTTCGCCAACATAAAGGATATGAACTATCACAAGAAACGCGTGCACGTGGAGGCCTGCTTCACGTGTGATGTATGTGGCAAAGCATTCAAGGTACAGGCACAGTTGAAAATCCATGTTCAAATTCATCAGCAATCGAAAGGCTACCAGTGTGAGTTCTGTGGCAAGTCCTTTTCACAACGAAATGGTATGACTGCTCATTTAAAAATTGCCCACGCTGAGCAACTGGGTGAGGAAGCCGTCGCAGAGCGAGAAATTATATGTGAGATTTGCCAGAAAAAGCTCAAGGGAAAAATATGTCTAAAATTGCACATGAAGACACACACTGACGAAAGAAATTTCGAGTGTTCCTATTGTGATAAAAAGTTCATTGCAAAACAGGATAAGATGCGCCACGAGCAGACACACACCAAAGAGTATCGATTCAAGTGTCGTTTCTGCGGTAAAGGATCAACGAGAAGAAAGCTGATACTATTGCACGAAGCCAAGGAGCATAATTTTACCTGTAGTGAACCACTTGGTCCATCGCATAGGTGCTCGATCTGTGATCGTGACTTTAGTTCGCCGTCTGCCCGACAAATACATGAATCTCTTCACAGTGATGATCTTCCAGTGCCATGCAAACTATGCGACCGGCGCTTTAAGAATGTTAAATATATGAAGTATCATTTGAAAGCACATCACAGATTAGGAAACGGGTCTACTTCCAGGGAGCAGCAAGTGTGCGACACAAGTTCGACAGGGATACAGTCGAAAGATTCAACGTCTTTAGAATGTGAAATTAATAATGCGAGCGGTGGTAAAGAAGGTAGTATGGCTGTGTATTCGACTTTCTGTTTAGCACAGCCCCATGGAAATGATATTGTTGTTTCGAAAGGCGGATAA
- Protein Sequence
- MSEITDSSSTKEDEKISRDVSEDDSFDIRLSSDGIKSFHCKFCNKSYSSKQLCKRHATAIHKKCDSSRTSGNIEQYHCQQCDMVFKSKHAFVAHEKTHSEDDNKQYRCETCSVILKTLASYKQHLNKHFGIKNEKNTLPCENCDAVFTSREGRRVHMILKHSAGQTYKCQECPMIFARKGNLRLHMTTHGIRPHVCSVCGKSYARIESLRTHEQGCANGKTGLFCEKCGQRFRKLELLEKHIQLGHPEKEHQCNYCGQSFESKRALSHHVRVHEGKFRCTHCSLQFVTEKALQNHEKSRHWEILGIERVIGKQGRRRDGTDRPKEPKARVRRNKYNPFLGLEHLAQLTEKMDHKSKSESDIQTQSAVLEDTHIRTSNYNIENTNFSMIDSDPIDKNSVHTVATIIEDANHDLEGNADNTGCERISNDNVVTDDIKETIIEKRTLLDEDTTLDCEQNMIENPAISVKEENEQLISDYEDVREFDGNNSESDGHENDWINEANEQDLITEIKIEHNPTVELSTKIPNAKIKAKRKARRKAKPVKKQSHPKKFNCDDCDKTFVHHYWLGVHREKRHGVRNEDDVLPKKNRVHICNQCDKSFSDWRNLLYHYKHVHKIAIQDSEVERCRSCKRRFINADELQLHSCFKGILVNRKPQYKCEICEKQYFSQHGLDCHRSSHPEYHKFNCDVCQKPFANIKDMNYHKKRVHVEACFTCDVCGKAFKVQAQLKIHVQIHQQSKGYQCEFCGKSFSQRNGMTAHLKIAHAEQLGEEAVAEREIICEICQKKLKGKICLKLHMKTHTDERNFECSYCDKKFIAKQDKMRHEQTHTKEYRFKCRFCGKGSTRRKLILLHEAKEHNFTCSEPLGPSHRCSICDRDFSSPSARQIHESLHSDDLPVPCKLCDRRFKNVKYMKYHLKAHHRLGNGSTSREQQVCDTSSTGIQSKDSTSLECEINNASGGKEGSMAVYSTFCLAQPHGNDIVVSKGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -