Mgen037304.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058073.1:273355276-273356795[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.4e-05 0.0074 17.9 1.2 1 23 103 125 103 125 0.97 2 12 2.8e-05 0.0022 19.5 2.5 1 23 132 154 132 154 0.97 3 12 1.3e-06 0.0001 23.7 1.3 1 23 160 182 160 182 0.97 4 12 1.1e-05 0.00083 20.9 2.1 2 23 189 210 186 210 0.93 5 12 4.3e-05 0.0034 18.9 1.2 1 23 239 261 239 261 0.97 6 12 3.6e-06 0.00028 22.4 0.8 1 23 267 289 267 289 0.98 7 12 5.9e-06 0.00047 21.7 0.3 1 23 295 317 295 317 0.98 8 12 8e-06 0.00063 21.3 1.3 1 23 323 345 323 345 0.97 9 12 5.4e-05 0.0042 18.7 2.4 1 23 353 375 353 375 0.98 10 12 6.2e-05 0.0048 18.5 0.2 1 23 381 403 381 403 0.94 11 12 7e-05 0.0055 18.3 1.7 1 23 409 431 409 431 0.98 12 12 1.9e-06 0.00015 23.2 1.3 1 23 437 459 437 459 0.98
Sequence Information
- Coding Sequence
- ATGTTCAGTGCTATAGAACATTCGGAATTTGCGGAAGGGAGTATTGATCCAACAGAGCACTtgtcctctataattgaaataaaattagaaTGCCTACAAGACGCTTTTAGTGAAACTGAAAACGAATCAAACAGTTTTGATTCAACTCAGAATCAAAGCTCAGAAGACAGACACAGCCGTTCCTTCGACGACCAAGTGTTGCTACAAACAAATGACAACCTTGCAACTTGCCCTGTGAAGAAGGATAATGAAAACCCGGGTACTTTCGACACGAAATCTTCACCAAACATCGATCCCAAGCGACCTCACGAATGTGAACTTTGCGGCAGACGGTTTGTTATGAAGAGTCATCTTGTCGGACATGTCCGTGCACACCAACGTGGCAAACGGTCCTACAATTGCGACGTCTGTGGTAAATCATACTCCAAAAGTGACTCCCTGTTGCACCATCGGTACAGCCATACCGGAGAACGGCCTTACAAATGCACTGTGTGCGGTAAAGATTTTACTCGTCAATCTAGTCTGATGGAGCACAAGTTTATTCATTCAACTGAATTCCGATGCAAGTGTGATGTTTGTGGCAAAGGATTTAATGCTGCTTCTACTTTAAGGAGACACAAGCGCATCCATACCGGGGAAAATGTTCGAAGGAAGGAAAAACTATTGGACCACACACCAAACAACAAGGAACCAGTCGACATCGACAAGCGACCGCACGAGTGTGAGATTTGCGGTAAACGATTCACGAATAAGTTCATTCTTGAAAGCCATCTGCGAGCACATCGGGGCGAAAAACCTTTCAGCTGCGATATATGCGATAAAACATTCGTTCGGAAGAGCGACATTTGGCAACACCGACTGAAGCACACCGGCGAACGACTCTACAAGTGTAACATATGCGATAAagatttcggacaaatatctacATTGAACAATCACCTGATAATGCACAGCGGGAAGCGGGAACACAAATGTACGGTGTGCGGTAAAGATTTTGCCTTCAAATTTAATCTGGCGGCTCACATGTTCATTCATAAAAGCAAGCAAGAGCGACAGCACAAGTGCACCTTGTGTGACAAAGCGTTTTACATCAAATCGAGACTGAAAGCACACATGTTATCTCATACAGGTGAGCGACCGTACAAGTGCACATCGTGCGATAAAACTTACGCCGTTAAGGCAGAGCTAACGGCACATATGCCCACTCACACGGGTGTCTATCCGCACTCGTGCGATGTGTGTGGCAAAGGATTCAGTAAGGCTTTCGTATTGAAAGAACACAAACGCACTCACTCTGGTGAGAAATCCTACAAATGCGAAATCTGTGGAAAGGCCTATTACCAACAAAAATCATTTACCAGACATTTGGGGACACACAAATCGGACGCGACTGTATGA
- Protein Sequence
- MFSAIEHSEFAEGSIDPTEHLSSIIEIKLECLQDAFSETENESNSFDSTQNQSSEDRHSRSFDDQVLLQTNDNLATCPVKKDNENPGTFDTKSSPNIDPKRPHECELCGRRFVMKSHLVGHVRAHQRGKRSYNCDVCGKSYSKSDSLLHHRYSHTGERPYKCTVCGKDFTRQSSLMEHKFIHSTEFRCKCDVCGKGFNAASTLRRHKRIHTGENVRRKEKLLDHTPNNKEPVDIDKRPHECEICGKRFTNKFILESHLRAHRGEKPFSCDICDKTFVRKSDIWQHRLKHTGERLYKCNICDKDFGQISTLNNHLIMHSGKREHKCTVCGKDFAFKFNLAAHMFIHKSKQERQHKCTLCDKAFYIKSRLKAHMLSHTGERPYKCTSCDKTYAVKAELTAHMPTHTGVYPHSCDVCGKGFSKAFVLKEHKRTHSGEKSYKCEICGKAYYQQKSFTRHLGTHKSDATV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -