Mgen006579.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:136680824-136682928[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0021 0.17 13.6 0.1 1 23 139 162 139 162 0.95
2 16 0.00013 0.0098 17.5 3.3 1 23 167 189 167 189 0.98
3 16 1.7e-05 0.0014 20.2 7.3 1 23 195 217 195 217 0.98
4 16 2.1 1.6e+02 4.2 0.3 3 23 226 246 224 246 0.95
5 16 0.12 9.5 8.1 0.1 5 22 295 312 294 312 0.93
6 16 2.9e-06 0.00023 22.6 0.5 1 23 319 341 319 341 0.99
7 16 0.00073 0.057 15.1 0.7 1 23 347 369 347 369 0.97
8 16 0.00017 0.014 17.0 0.5 1 23 375 397 375 397 0.99
9 16 2.7e-06 0.00021 22.7 1.4 1 23 403 425 403 425 0.96
10 16 3.6e-06 0.00028 22.3 0.5 1 23 431 453 431 453 0.99
11 16 4.3e-08 3.4e-06 28.4 1.0 1 23 459 481 459 481 0.99
12 16 5e-07 3.9e-05 25.0 0.6 1 23 487 509 487 509 0.99
13 16 0.00068 0.054 15.2 0.3 1 23 517 539 517 539 0.97
14 16 0.00028 0.022 16.4 0.9 2 23 542 564 542 564 0.96
15 16 4.3e-05 0.0034 18.9 0.5 1 23 569 591 569 591 0.98
16 16 2.5e-06 0.00019 22.9 0.7 1 23 597 619 597 619 0.97

Sequence Information

Coding Sequence
ATGGACGaattaattcaaatcaaagagGAAACCGAACAGCCCGATCTGGAACTAACCATGAATGTAGGAAATCCGCAAGAAATGTTCTCGAAAAGTCACAATGCAGTATTTAACGGAGACAGCACGATTTGTTCGATGATTCCGGCTAAAAACGACTGCATTGCGTACAGTACCGAAGTGAAGTTGAAAGTTGAGCCTCCTGATTTAAACTTCAGCATTGCTGATGAAAGTAGCTTCGAAGCCTCAACTGAAAGTAACACCGACGAGGGATCGAAAGAAGGCAACGTTCAGCGTTGTCAAACTGAACCGCATAATAGTAACAATTTTGCAAAGCGAAGCCATCCCAGTAAGAAATACACCAAAAGAAAGCAAACTGTTTCGGGAAGTAGTCTCCGAGAAAACAGGGTACGATTGTACAACTGCTCCCTGTGTGGTTCACCGTTTCCTAGTCGAATCGATCTTCAGACGCACCAGGTCTCAGCTCACCGGGAAAAACCGTATGAATGTTCATTCTGTGAAAAGTCCTTCCACACAAGACGGAATCTGGGAAAGCACCTGAATGTTCATGCCGGCTACAAACCGCACCAGTGCAAGATCTGCAATCGGAACTTCTCGAGAAGTAATCACCTGACTCGGCATCTGAAGCAGCATTCCAGTCATCCCTCCGCTATCAACTGCACTGCCTGTGAGATGGTTTTCTTCGAGAAGGGGAAGTTCGATGAACATCTGCTGAAGCATGAACAACAGCCAGCTAAGGATGCCAGCTCTCCGGATGAAGATAAGTATGACAGTAGGCTTTACTTCAACGGAAAAGATTTTGACGAACCAAGTGCTTTGGAACAGCACAAGACTGGTCACTTCGAGGAAACCGTAGAATACAAAATGTGTGATAATACTTTTACCGAAACAGAAAGCCTTAAGTTGCATATGCGGATAGATGGCGACGAACAGTTGTACAAATGTGACATCTGCGATGAGAGCTATTCAGAAAGTACACTTCTCATTAGACACAGGAGAATGCACACGGGCGAATGGCCGTACCAATGTGTTACGTGTGAAAGAGGTTTCACCGACGAGTATTATTTGAAAGTTCATTCGGAAAAGCACGCGGTCGAAAAAAGATACAAGTGTGATATTTGTGAAAAAGAGGTTAATACTAATCAAAGGCTCAAGCTTCACATGATAACCCACACCGGAGATAGGCCACATAAATGCGACATATGTGGCAAAACATTCACAACCCCTGGTTCGTTGCGTTACCACAGTAGTGTCCATAAGACCGAACGTCCCTTCAAATGTAGCATTTGTGAGAAAGAATTTGCCCTTAGTGTTCAGCTCAAGATACACATGAGAAGCCACAATGAAAAACGTCCTTTTCAGTGCAACATTTGTGACAAATCGTTTAGGGTGAACTCTTTGCTTACCCAACATATACGAAGTCATACCGGCGAAAGGCCATTTAAATGCGATATCTGCGGTTTATCCTACAGTTCAAGTAGCTACCTCACAATTCACCGTAGAGTGCACCTTGATCAGGACAAAAAACCATTCGAGTGTGGTGTATGCGGAGCACGATTCATCACAAAAACCAGACTCAACTCCCACAGTAAGGTACATGCTCGGAAATGCGCTGATTGTGATATACATTTTTCCTCCCAGAGCGAATTCGAAGAGCACAGGGATACCGTTCACGAGAAACGGCCATTCAAATGTGACATTTGTGATAAAGGTTTTTTCACCAAGGAAGTCTTGCGGGTTCATCGGCTCATCCATACCAGCGATATACGATACGATTGTCAGATCTGCGGACGAAGCTACACACGCAAAAGTACCCTCGATCGGCATGCTAAAGTACATGCATCGGGAGAATTGGACGCCCCACCGGACGACCTAGAAACcactcaatga
Protein Sequence
MDELIQIKEETEQPDLELTMNVGNPQEMFSKSHNAVFNGDSTICSMIPAKNDCIAYSTEVKLKVEPPDLNFSIADESSFEASTESNTDEGSKEGNVQRCQTEPHNSNNFAKRSHPSKKYTKRKQTVSGSSLRENRVRLYNCSLCGSPFPSRIDLQTHQVSAHREKPYECSFCEKSFHTRRNLGKHLNVHAGYKPHQCKICNRNFSRSNHLTRHLKQHSSHPSAINCTACEMVFFEKGKFDEHLLKHEQQPAKDASSPDEDKYDSRLYFNGKDFDEPSALEQHKTGHFEETVEYKMCDNTFTETESLKLHMRIDGDEQLYKCDICDESYSESTLLIRHRRMHTGEWPYQCVTCERGFTDEYYLKVHSEKHAVEKRYKCDICEKEVNTNQRLKLHMITHTGDRPHKCDICGKTFTTPGSLRYHSSVHKTERPFKCSICEKEFALSVQLKIHMRSHNEKRPFQCNICDKSFRVNSLLTQHIRSHTGERPFKCDICGLSYSSSSYLTIHRRVHLDQDKKPFECGVCGARFITKTRLNSHSKVHARKCADCDIHFSSQSEFEEHRDTVHEKRPFKCDICDKGFFTKEVLRVHRLIHTSDIRYDCQICGRSYTRKSTLDRHAKVHASGELDAPPDDLETTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-