Mgen037343.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058073.1:274284976-274287537[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00097 0.076 14.7 0.7 2 23 251 272 250 272 0.98 2 20 0.0036 0.28 12.9 3.5 2 23 280 301 279 301 0.97 3 20 1.3e-05 0.00099 20.6 1.7 1 23 307 329 307 329 0.98 4 20 2.7e-05 0.0021 19.6 3.2 1 23 335 357 335 357 0.98 5 20 0.0002 0.016 16.8 5.3 1 23 363 385 363 385 0.97 6 20 1.7e-05 0.0013 20.2 3.1 1 23 391 413 391 413 0.98 7 20 2.4e-05 0.0019 19.7 0.8 1 21 419 439 419 440 0.96 8 20 8.6e-05 0.0067 18.0 2.3 1 23 458 480 458 480 0.98 9 20 0.027 2.1 10.1 0.2 2 23 487 508 486 508 0.96 10 20 3.6e-05 0.0028 19.2 7.9 1 23 514 536 514 536 0.98 11 20 2.5e-05 0.002 19.7 1.3 1 20 542 561 542 564 0.93 12 20 5.6e-06 0.00044 21.7 0.9 2 23 571 592 570 592 0.96 13 20 1.3e-05 0.001 20.6 2.4 2 23 599 620 598 620 0.97 14 20 5.2e-06 0.0004 21.9 2.6 1 23 626 648 626 648 0.98 15 20 0.00061 0.048 15.3 1.4 1 23 665 687 665 687 0.99 16 20 0.00017 0.013 17.1 1.5 1 23 691 713 691 713 0.96 17 20 5.9e-05 0.0047 18.5 1.3 1 23 719 741 719 741 0.98 18 20 0.0001 0.008 17.8 0.4 1 23 747 769 747 769 0.98 19 20 0.00016 0.012 17.2 2.9 3 23 777 797 776 797 0.97 20 20 0.0015 0.11 14.1 0.2 1 23 803 825 803 825 0.98
Sequence Information
- Coding Sequence
- ATGTCGGGTTGCCTTGCGCTTCCAGGATGCTGCAGATGTTGCCTGGAAGAGCAGACTGACTCTATCGATCTGTACTCTACTCTGGAGGAGTTTAATTCTCCGATACGTGACTTGCTAGAGGACTGCAGTGGAATCACGATTAACGACGATGATCACTTTCCGAAGAATATCTGCAGTAACTGTTTGGGTGATTTATCTAAAGCAACACGTTTTCGAGTGCGATGTTTAAAGTCTGAAGAGATACTGAAGAATATAAAAATTGACATCAAAGAACCCCGAAAGTATGAAAACGAGCAAGTAGTACGTGACGACGTGATTGATCCGGTGGCCAAATCAGATGACTTGGATGAGGATCAATGTTCGAAGCGTAATGAGGACGATGTGACAGAGGAGAAATGTGAAAGCATAGGAGAGGAGCaaccaaatttagaaaaaaatcaaatgatcCAAGAAAAGCAACATTTGCAAGAgtcatcaaaaattgaaaatgaatgTACACCATCGGAAGATGAGAACACCAAGCGGAACCTTCGTTTACTTGAAAAACAAGACGACGGCGAATGCTCACGTCAGTTTGCAATAAACGTTAATGAGTTTCTGAAGATAGAAGAGAAGGTAAACATCGGAAATGAAGATCTGCCAACCGAACAAGAGACGGCTGGATATCATTTGAATGATTCTGACATAAAGTTAGCCAAGGACGAAGCAGTTGATGAGGGTACTAACGAAAAGGCAGATAACTCAACGGTTCAATGTAGCGTATGTAGACAAGAGTTTCAGGGCAGCGATGAACTGCACCGACACATCCGAATTCATTCGGAAGAAAAAATGGAGCTTAAATGTTACATCTGCTGCAAGAGGTTCACTCTTAAGAGCGCTCTGATCAGACATCGGCGCATTCATACGGCCGAACGTACGCATAAATGTAATCAATGCGACAAAAGCTTTGCTGCGAGATTTTCCCTCATAAGACACATGCTTATTCATAGCAACGAACGGCCACACAAGTGTGAAGTCTGTGGCAAAGGATTTAACATGAAAACCACACTTAAAAAACACCGAATGATGCACACCGGCGAGCGACCGCACAGCTGCGACATTTGTGGAAAAactttcacgacatccagttcctgCATAAAGCACAAACGCATTCACACTGGGGAACGGCCATACAAGTGCCACCTGTGTACGAAATCATTTATTTCCGGTAGTCAACTGAAGGTTCACATCCGTTTTCATACCGGTGATAGGCCATACAAATGTGAGATCTGCGGTAAAGGGTTTACCGTTGCACATTCGTTGAAATACCACCGGCGCAACAGTTGCATCAGTGCGATTAAAATCGAGGAAAGCAAAGATAACAATGTGACACATAAATGCGAAACTTGTGGGATGGAGTTCGTGAAACTGGCATTCCTCAAAAGACACATGCGTCAGCATTTGAACGATCAACCGCTGAATTGTGGAACTTGCGGTAAGATCTTTCTGAAAAGAGCCGTTTTACTGAGGCACATGCTTTCGCATAGCGGCGAAAAGCCACATAAATGTGACGTCTGTGGAAAATGCTTCAGCACAACCTGCGCCCTCAAACGTCACCGGCGAGTTCATACGGGCGAACGACCACACAAATGTGATTTCTGCGGTAAAGGATTTATCACGCGAAGTGAACTAACACGTCACAGGCCAGTTCACACGGGCGAAAGACCTATAAAGTGTGAGATTTGTGGCAAAGGTTTTATCACCAACAGCCATCTTAAGCTGCATAAGGCCAGTCACGCCAACCAAGGTATCCTGGAATGTCATGTTTGCGGCAAAAAGTTTACCATCAGAAGAAATCTCATTCGACACGAACGAAGGCATGTGGCAGTTCGAGCGCATAAATGTGAAATCTGTAAAAAAGGCTACATCACGAGGAGCCTTCTCAAACGCCACATGCTCAGTCATTCGAGACCGGCAAAGGAACGTGCCGCCGACGAAGACGATAAAGGTCCTTATAAGTGTGACATTTGCGATGTCAAGTTTGAAAAGGGTACCCTTTTCCGGCGACATGTTAGAAAACACGAACTACCGCACAAATGTGACCTGTGCGGTAAAGGATTCACGATCAGATCGCTTCTGATGCGACACAATCTTTCGCACACCGGCGAGCGGCCACACAAATGCGACATTTGCGATAAGGCATTCAGCACCACTTTCGCGGTAGCCAGACACAAGCGAGTACACACCGGCGAGCGGCCACATAAGTGTGACATCTGTGGTAAGGAATTCATCGCCGGTGGTCAGCTGACACAGCACCGGCGCGTACACACGGGCGAACGGCCCAACCATTGCGATATCTGCGGGCGCGGATTCATGAACAACACACTGCTCAAACGGCACAAACGGTCTCACGCGGCCGATCGGTTGCACGAATGTAACGTCTGCGGTGCGGAGTTCAATGCGGCCATCGATCTTTCCAGACACAAACGGTCCCATGCCCAAGAAAGTGACAGTGAGGGCCTGTAG
- Protein Sequence
- MSGCLALPGCCRCCLEEQTDSIDLYSTLEEFNSPIRDLLEDCSGITINDDDHFPKNICSNCLGDLSKATRFRVRCLKSEEILKNIKIDIKEPRKYENEQVVRDDVIDPVAKSDDLDEDQCSKRNEDDVTEEKCESIGEEQPNLEKNQMIQEKQHLQESSKIENECTPSEDENTKRNLRLLEKQDDGECSRQFAINVNEFLKIEEKVNIGNEDLPTEQETAGYHLNDSDIKLAKDEAVDEGTNEKADNSTVQCSVCRQEFQGSDELHRHIRIHSEEKMELKCYICCKRFTLKSALIRHRRIHTAERTHKCNQCDKSFAARFSLIRHMLIHSNERPHKCEVCGKGFNMKTTLKKHRMMHTGERPHSCDICGKTFTTSSSCIKHKRIHTGERPYKCHLCTKSFISGSQLKVHIRFHTGDRPYKCEICGKGFTVAHSLKYHRRNSCISAIKIEESKDNNVTHKCETCGMEFVKLAFLKRHMRQHLNDQPLNCGTCGKIFLKRAVLLRHMLSHSGEKPHKCDVCGKCFSTTCALKRHRRVHTGERPHKCDFCGKGFITRSELTRHRPVHTGERPIKCEICGKGFITNSHLKLHKASHANQGILECHVCGKKFTIRRNLIRHERRHVAVRAHKCEICKKGYITRSLLKRHMLSHSRPAKERAADEDDKGPYKCDICDVKFEKGTLFRRHVRKHELPHKCDLCGKGFTIRSLLMRHNLSHTGERPHKCDICDKAFSTTFAVARHKRVHTGERPHKCDICGKEFIAGGQLTQHRRVHTGERPNHCDICGRGFMNNTLLKRHKRSHAADRLHECNVCGAEFNAAIDLSRHKRSHAQESDSEGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -