Mgen007543.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:156091376-156093193[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2.3e-06 0.00018 23.0 0.7 1 23 16 38 16 38 0.98
2 21 4.8e-06 0.00038 21.9 2.5 1 23 44 66 44 66 0.99
3 21 8.1e-07 6.4e-05 24.4 2.0 1 23 71 93 71 93 0.99
4 21 3.7e-05 0.0029 19.2 2.7 1 23 99 121 99 121 0.97
5 21 0.0007 0.055 15.1 4.1 1 23 127 149 127 149 0.99
6 21 9e-06 0.0007 21.1 0.2 1 23 155 177 155 177 0.98
7 21 0.23 18 7.2 3.2 1 21 183 203 183 205 0.93
8 21 6.7e-06 0.00053 21.5 1.1 1 23 211 233 211 233 0.97
9 21 8.7e-06 0.00069 21.1 0.5 1 23 239 261 239 261 0.98
10 21 4.9e-05 0.0038 18.8 1.0 1 23 272 294 272 294 0.97
11 21 9.9e-06 0.00078 21.0 0.6 1 23 300 322 300 322 0.99
12 21 0.00028 0.022 16.4 0.3 1 23 328 350 328 350 0.98
13 21 0.25 19 7.1 5.9 1 21 356 376 356 378 0.94
14 21 2.5e-07 2e-05 26.0 1.6 1 23 384 406 384 406 0.99
15 21 2.5e-05 0.002 19.7 0.3 1 23 412 434 412 434 0.99
16 21 3.4e-06 0.00026 22.4 3.6 1 23 439 461 439 461 0.99
17 21 0.012 0.92 11.3 5.6 1 23 467 489 467 489 0.96
18 21 1.6e-05 0.0013 20.3 0.2 1 23 495 517 495 517 0.99
19 21 0.14 11 7.9 6.0 1 21 523 543 523 545 0.94
20 21 5.7e-06 0.00044 21.7 1.6 1 23 551 573 551 573 0.97
21 21 0.003 0.24 13.1 0.3 1 23 579 601 579 601 0.96

Sequence Information

Coding Sequence
ATGTTGCTTGTTCAACACATGCACATTCACACAAGCCAGCATACGTACAAATGCAATGTATGCGGAAAAGAATTTGCCATCAAGCGTTATCTAAATAAACACATGTCTATTCACCAAAGTGTGTACGAGTATAAGTGCGAAGTGTGTGGCAAAAGCTTTCATGACGATGCTTACCTCACGAGACACAAACGCATGCATACAAACGAGAAGTTTAAATGCACCATATGCGAGAAAGATTATACCACCAAATATGATCTCAGCAGGCACATGAAAATTCACGTGGATGGTTACAAGCATAAGTGTGATTTGTGCGGCAAACGATTCATCTTCAAATCACTTTTGAAAGACCACGAAAATAGTCACACAGGTGAACGGCCCTACAAATGCACTGTATGTGAAAAAGATTTTCAGGGTAAACTAAATCTAGCTCATCACATGCGCCATCACTCGAGCGAGCGGCCTTACAGATGCGCCGTATGTGGAAAAGATTTCGTCATTCAGTCTTTCCTAACCAGACATATGCTTGTTCACACGAATGATTATAAGCATAAGTGTGACGCTTGTGGCAAAGGATTTATGACCGAAAAACGCTTGCAAGATCATGAACGTTGTCATACAGGAGAGCTACCGTACAAATGCACTGTATGTGGAAAAAAATTCGCGACTATGTTTAACCTATCCAGGCACAGGGTTATTCACAAAAGAGATTATAGGTTCAAGTGTGAAGTGTGTGGCAAAGCCTTTCATGATGGCACTAACCTCGCGAGACACGAACGCGTTCATACAAACGAGACTCATGTGGATGGTTACGAGCATAAGTGTGATGTATGCGACAAAAGATTCATCTCCATATCACTTTTGAAAGAGCACGCAAATAGTCACGTAGGTGCACAGCCTTACAAATGTACTGAATGCGGAAAGGACTTTGGTGATGAGAGAAAACTTTCTTTACACATGCGACTTCACACAAGCGAGCGACCGTACAAATGCACCCTGTGTGAGAAAGAATTTGCCATTATGGTTTACCTAACTAAACACATGCTTATTCACACGGATAACTATAATCATAAGTGTGGCGTTTGTGGCAAAGGATGTGTGACCAGAAAACGCTTAAAGGATCATGAACGCTGTCATACAGGAGAGCGACCGTTTAAATGCACTGTCTGTGAAAAAAGTTTCGCGACTCAGGTTTACTTAACGAAACATATGTCTACTCACCAAAGTGAGTTCAAATATAAGTGCGAAGTGTGCGGCAAACCCTTTAATGATGGTGTTTACTTCGCGAGACACAAACGCATTCATACGAACGAGGGATTCAAATGCACCATATGCGAGAGAGCTTATTCCAATAAGTGCAATCTCAGCAGACACATGAAAATTCACGTAGATGGTTACGAGCATAAGTGTGATGTGTGCGGCAAAGGATTCACCTGCAAATCACTTTTGCAAGATCACGAACATAGTCACACAGTTGAACGGCCTTACAGTTGCACCGTATGTGGGAAAGATTTCGCCATTCTGGTTTACCTAACTAAACACATGCTTACTCACACGGATGATTACAAGCATAAGTGTGACGTTTGTGGCAAAGGTTGTATGACCAGGAAATTACTGGAAGATCATAAACGCTGTCATACAGGAGAGCGACCGTACAAATGCACTGTATGTGGGAAAGGTTTTGCGACTAAGACATACCTATCCAAACACAGGTTTATTCACGAAAGTGATTACAAGTACAAGTGTGAAGTGTGTGGTAAAGGCATGAATGATAGTTCAGGCTTCGCAAAACACAAAAGCCTTCATACGAACGAGAAGTAA
Protein Sequence
MLLVQHMHIHTSQHTYKCNVCGKEFAIKRYLNKHMSIHQSVYEYKCEVCGKSFHDDAYLTRHKRMHTNEKFKCTICEKDYTTKYDLSRHMKIHVDGYKHKCDLCGKRFIFKSLLKDHENSHTGERPYKCTVCEKDFQGKLNLAHHMRHHSSERPYRCAVCGKDFVIQSFLTRHMLVHTNDYKHKCDACGKGFMTEKRLQDHERCHTGELPYKCTVCGKKFATMFNLSRHRVIHKRDYRFKCEVCGKAFHDGTNLARHERVHTNETHVDGYEHKCDVCDKRFISISLLKEHANSHVGAQPYKCTECGKDFGDERKLSLHMRLHTSERPYKCTLCEKEFAIMVYLTKHMLIHTDNYNHKCGVCGKGCVTRKRLKDHERCHTGERPFKCTVCEKSFATQVYLTKHMSTHQSEFKYKCEVCGKPFNDGVYFARHKRIHTNEGFKCTICERAYSNKCNLSRHMKIHVDGYEHKCDVCGKGFTCKSLLQDHEHSHTVERPYSCTVCGKDFAILVYLTKHMLTHTDDYKHKCDVCGKGCMTRKLLEDHKRCHTGERPYKCTVCGKGFATKTYLSKHRFIHESDYKYKCEVCGKGMNDSSGFAKHKSLHTNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-