Basic Information

Insect: Malaya genurostris
Gene Symbol: SCRT1
Assembly: GCA_030247185.2
Location: CM058071.2:116682684-116685477[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 9.9e-05 0.0078 17.8 1.4 1 23 75 97 75 97 0.98

2 24 4.5e-05 0.0035 18.9 6.6 1 23 103 125 103 125 0.97

3 24 0.00099 0.078 14.7 0.5 1 23 131 153 131 153 0.98

4 24 0.00018 0.014 17.0 0.8 1 23 159 181 159 181 0.97

5 24 6.5e-06 0.00051 21.5 4.1 1 23 187 209 187 209 0.98

6 24 7.8e-07 6.1e-05 24.4 1.4 1 23 215 237 215 237 0.98

7 24 0.0024 0.19 13.5 5.2 1 23 243 265 243 265 0.98

8 24 1.4e-05 0.0011 20.5 0.9 1 23 271 293 271 293 0.98

9 24 0.00024 0.019 16.6 0.8 1 23 297 319 297 319 0.99

10 24 0.0036 0.28 12.9 1.3 1 23 333 355 333 355 0.98

11 24 0.0011 0.084 14.6 4.1 1 23 363 385 363 385 0.98

12 24 0.0012 0.092 14.4 0.5 1 20 391 410 391 411 0.95

13 24 0.00089 0.07 14.8 0.5 1 23 420 442 420 442 0.97

14 24 3.5 2.8e+02 3.5 0.6 2 23 449 472 449 472 0.75

15 24 0.00011 0.0085 17.7 0.5 1 23 539 561 539 561 0.97

16 24 1.6e-05 0.0013 20.3 0.4 3 23 569 589 567 589 0.97

17 24 2.8e-06 0.00022 22.7 3.7 1 23 595 617 595 617 0.98

18 24 4.9e-05 0.0038 18.8 0.9 1 23 623 646 623 646 0.97

19 24 3e-05 0.0024 19.4 0.6 1 23 652 674 652 674 0.98

20 24 7.8e-05 0.0061 18.1 0.8 2 23 681 702 680 702 0.97

21 24 0.006 0.47 12.2 0.1 2 20 709 727 708 730 0.92

22 24 0.00012 0.0097 17.5 5.9 1 23 737 759 737 759 0.98

23 24 0.00012 0.0097 17.5 0.1 1 23 765 787 765 787 0.98

24 24 0.0043 0.34 12.7 2.0 3 23 824 845 823 845 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	9.9e-05	0.0078	17.8	1.4	1	23	75	97	75	97	0.98
2	24	4.5e-05	0.0035	18.9	6.6	1	23	103	125	103	125	0.97
3	24	0.00099	0.078	14.7	0.5	1	23	131	153	131	153	0.98
4	24	0.00018	0.014	17.0	0.8	1	23	159	181	159	181	0.97
5	24	6.5e-06	0.00051	21.5	4.1	1	23	187	209	187	209	0.98
6	24	7.8e-07	6.1e-05	24.4	1.4	1	23	215	237	215	237	0.98
7	24	0.0024	0.19	13.5	5.2	1	23	243	265	243	265	0.98
8	24	1.4e-05	0.0011	20.5	0.9	1	23	271	293	271	293	0.98
9	24	0.00024	0.019	16.6	0.8	1	23	297	319	297	319	0.99
10	24	0.0036	0.28	12.9	1.3	1	23	333	355	333	355	0.98
11	24	0.0011	0.084	14.6	4.1	1	23	363	385	363	385	0.98
12	24	0.0012	0.092	14.4	0.5	1	20	391	410	391	411	0.95
13	24	0.00089	0.07	14.8	0.5	1	23	420	442	420	442	0.97
14	24	3.5	2.8e+02	3.5	0.6	2	23	449	472	449	472	0.75
15	24	0.00011	0.0085	17.7	0.5	1	23	539	561	539	561	0.97
16	24	1.6e-05	0.0013	20.3	0.4	3	23	569	589	567	589	0.97
17	24	2.8e-06	0.00022	22.7	3.7	1	23	595	617	595	617	0.98
18	24	4.9e-05	0.0038	18.8	0.9	1	23	623	646	623	646	0.97
19	24	3e-05	0.0024	19.4	0.6	1	23	652	674	652	674	0.98
20	24	7.8e-05	0.0061	18.1	0.8	2	23	681	702	680	702	0.97
21	24	0.006	0.47	12.2	0.1	2	20	709	727	708	730	0.92
22	24	0.00012	0.0097	17.5	5.9	1	23	737	759	737	759	0.98
23	24	0.00012	0.0097	17.5	0.1	1	23	765	787	765	787	0.98
24	24	0.0043	0.34	12.7	2.0	3	23	824	845	823	845	0.92

Sequence Information

Coding Sequence: ATGAGCGAAACAGGGCCCCTGGCGAAAGAAGAACCGGATATCAAACTAGAGATATCGTACAATGAAGAGACAATAGATGATGCAAAAATCGAGCCTCAAGTGAATGAGAAGAAACCTACGGTAACTGCGGAACATCTAAACGTGGATGATAAAAGCATCATTAATCAGAACAGCCAAGGTGATAAGACGAATGCGAAGTTAGCCGTAGATAAAAATCGTCGGCACAAATGTGACGTTTGTGGTAAAGCATTCTCGGAGAAATTCATCCTCACGAACCACATCCGCTCGCATACTGGCGAGAGACCCTTTCACTGTGAGGTATGCGGGAAAACTTTCAAACAGCGAAATCATTTGTGGCGACACAAGTTTACCCATTCCGATGCTCGACCGTTTGAGTGCAAGCAATGCAAAAAGGGATTCCTTACCCGAGAATATCTGGCAATTCACATGCTCGTCCATGCTGGCAAGCAACGGTACCGGTGCGGTATATGCGGGAAGATTTGCAGTACAAGTAAAGGCTTGGAAATGCACAACAGAGCCCACAACGGCGAAGATCCATTCAAATGCGATACGTGCGGTAAAAACTTTTCCAACTTACATTATCTGACGTCTCATCAACGGCTTCACACTGGGGAAAATTTGTTCAAATGTGAGGTATGTGGCAAGGAATTTGCTTTCAAAAGTCATCTCCAGACTCATATGGTAGTTCACACGAACGACCGTGCCCACAAATGTGACATCTGTGGAAAAGGATTCATCTCGAACTGTCGTCTTGTGACGCACCTTCACACTCACACCGGTAACAGCCCGCACAAGTGTAATCTGTGTGACAAGGTTTATACATCGGCCAAAGCGGTGCGAGCACATATGAAAGTTCATGACAATCCGTACAAATGTGAAGTTTGTGGAATGCTGTTCACGGAAAACTTGTCCCTGCGAAGGCATCGCAGTACTCATGTGGGAAAGAAGATAAGGAAACGCTATAAAGTTCGTCACCATAAATGTAGAGTTTGCGGCATTGAATGTGCCGATGTGGATGCTCTGAGAGAACACAGAAAAACGCACCCCAGTGTTAGAATCGAACCACACAAATGTGACATTTGCAGTATGAAATTCGCACTGCACAAAACTCTCGAGCGGCACATGAAAGTTCATACCGATGAAAATCCGCACCGATGCGATGTCTGTGGGAAGCAGTTCCAGAAGAACATGCTTCTCAAAAGACACGTGATATGTGTTCATTCCAACAAATTACCTTTCAAATGTACGATTTGCGATGAAGGGTTTCCCTATGATCGGGACCTTCGGCAGCACCGGTTCGTGCATCTGAACGTTGCAACGGAACAGTGTACCATTTGCGGCATTAAGTATATGAAAGGTAAGAACGGACTGAAAACCCACATCGAAAAAAAGCATCCCGAAACAATTTCGGGACAAGATGGAACGAACGAAACGAGCATAATGCCGCAGGATACAGGAAACGATGGTCCGGCACCGCAAGTAGACGGTATCGCCCAATCCGAACAAAAATCGGAAAATACCGACAAAAAAACTGATTCGGATAAAAAGTCGTCTAACCCCGCCACTGTCAGTAAAACCAAAAAGAAGCCTTCTTTCAAATGTGACATTTGTAGCAAAGAATTTTCCACACGACCACTACTCGCTTCGCACAGAGTTCGGCATACGAACGAAAAGCCCTTCGGTTGTGATGTTTGTGGGAAAGATTTCTACCGCCAAGCCGAACTACGAAGACACCGGCTCAGTCATACCAAGGAGCGATTGCATAAGTGTACGCTCTGCGAAAAGTCGTTCACCACCAGTAGCTACTTGACGATGCACTTGCGCATCCACACCGGGGAACAGTTGCACAGATGCGACGTCTGTGGCAAAGGCTATAACACCCGGGAAGGATTGACGCTGCACCGTCGAAGCGTGCATACCGGCGAACGGCCGTTCTCGTGCGATATATGCGGCAAATCTTTTCCTATTTACAATCAAATGAAGCAGCATCAGCGAATTCACACCAGTGAAAGAACCGTCAAATGCGATATGTGTGACAAAGCGTACTTCACTGAAAGTCAACTGCGGCGGCATAAGATTTCGCATAGTGACGTGAAGCCGGTCAGTTGCGATGTCTGTGGAAAAGGTTTCATGGATAATTACTTCCTAAAATTGCATCTTCCGATTCACACGGCAGATGGTTTGCCGCACAAGTGTGAATTCTGTCCGAAACAATTTTCCACGTTGAATCATCTTACCCAACATCGACGGATTCATACCGGTGAGAAACCGTACAACTGTGGTGTGTGCGATAAACAGTTTATTCGACCGGTGGACATGCTTAGACACGAACGTATTCATGCCACCGAGCGACCATACCGTTGTGTAACCTGTGGCGAAGGCTTTcttaaacaaatcgattgcaaacACCACAAGCAGCAAGCTCATGGTGGCAAACCACTGGCATGTTGCCAGCTTTGTAATAAACAGTATGGAACACAAAGAAGCCTGGAACGCCACATGACTGCGGTGCATTCGGACGAAGCTGATACTGCACTATTGGAGGAACCCAACATCGATTctgagcagcagcagcagcaggcgCCGGAACATTTGCAGCAAGTGGAAAAAGAAGAAATTTCCGCCCCGCAGGTTACCGAAGATGCTCGTGAATGA
Protein Sequence: MSETGPLAKEEPDIKLEISYNEETIDDAKIEPQVNEKKPTVTAEHLNVDDKSIINQNSQGDKTNAKLAVDKNRRHKCDVCGKAFSEKFILTNHIRSHTGERPFHCEVCGKTFKQRNHLWRHKFTHSDARPFECKQCKKGFLTREYLAIHMLVHAGKQRYRCGICGKICSTSKGLEMHNRAHNGEDPFKCDTCGKNFSNLHYLTSHQRLHTGENLFKCEVCGKEFAFKSHLQTHMVVHTNDRAHKCDICGKGFISNCRLVTHLHTHTGNSPHKCNLCDKVYTSAKAVRAHMKVHDNPYKCEVCGMLFTENLSLRRHRSTHVGKKIRKRYKVRHHKCRVCGIECADVDALREHRKTHPSVRIEPHKCDICSMKFALHKTLERHMKVHTDENPHRCDVCGKQFQKNMLLKRHVICVHSNKLPFKCTICDEGFPYDRDLRQHRFVHLNVATEQCTICGIKYMKGKNGLKTHIEKKHPETISGQDGTNETSIMPQDTGNDGPAPQVDGIAQSEQKSENTDKKTDSDKKSSNPATVSKTKKKPSFKCDICSKEFSTRPLLASHRVRHTNEKPFGCDVCGKDFYRQAELRRHRLSHTKERLHKCTLCEKSFTTSSYLTMHLRIHTGEQLHRCDVCGKGYNTREGLTLHRRSVHTGERPFSCDICGKSFPIYNQMKQHQRIHTSERTVKCDMCDKAYFTESQLRRHKISHSDVKPVSCDVCGKGFMDNYFLKLHLPIHTADGLPHKCEFCPKQFSTLNHLTQHRRIHTGEKPYNCGVCDKQFIRPVDMLRHERIHATERPYRCVTCGEGFLKQIDCKHHKQQAHGGKPLACCQLCNKQYGTQRSLERHMTAVHSDEADTALLEEPNIDSEQQQQQAPEHLQQVEKEEISAPQVTEDARE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -