Mgen007627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:157170758-157177128[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0013 0.1 14.3 1.4 1 23 61 83 61 83 0.94
2 25 0.00013 0.01 17.4 1.6 1 23 89 111 89 111 0.96
3 25 8.1 6.4e+02 2.3 4.2 2 23 124 145 117 145 0.91
4 25 1.9e-06 0.00015 23.2 0.8 1 23 151 173 151 173 0.99
5 25 0.0047 0.37 12.5 1.6 1 23 179 201 179 201 0.95
6 25 3e-05 0.0024 19.4 1.2 1 23 207 229 207 229 0.97
7 25 1.5e-05 0.0012 20.4 0.3 1 23 235 257 235 257 0.98
8 25 0.00037 0.029 16.0 3.0 1 23 263 285 263 285 0.97
9 25 7.8e-05 0.0061 18.1 0.3 1 23 291 313 291 313 0.97
10 25 0.00014 0.011 17.3 0.5 1 23 319 341 319 341 0.98
11 25 1.2e-05 0.00092 20.7 0.7 1 23 347 369 347 369 0.98
12 25 0.22 18 7.3 7.8 1 23 374 396 374 396 0.98
13 25 6.5e-05 0.0051 18.4 2.3 1 23 483 505 483 505 0.97
14 25 3.8e-06 0.0003 22.3 1.6 1 23 511 533 511 533 0.97
15 25 0.0013 0.1 14.3 1.2 1 23 541 563 541 563 0.89
16 25 0.033 2.6 9.9 0.8 1 13 569 581 569 582 0.90
17 25 0.00043 0.034 15.8 0.9 1 23 651 673 651 673 0.97
18 25 0.84 66 5.5 0.4 7 23 685 701 679 701 0.80
19 25 4.2e-06 0.00033 22.1 1.6 1 23 712 734 712 734 0.98
20 25 0.0063 0.5 12.1 0.9 1 23 740 762 740 762 0.95
21 25 2.1e-05 0.0017 19.9 0.3 1 23 768 790 768 790 0.98
22 25 0.00026 0.02 16.5 1.7 1 23 796 818 796 818 0.98
23 25 9.4e-05 0.0074 17.9 0.8 1 23 824 846 824 846 0.95
24 25 3.2e-06 0.00025 22.5 0.1 1 23 852 875 852 875 0.96
25 25 2e-05 0.0016 20.0 4.4 1 23 880 902 880 902 0.98

Sequence Information

Coding Sequence
ATGGAAACAACAGATCACGATAGTGACATTCTAGTAAAACAGGAAAATATAATAACAATTGAACCAACGAAACTCGATGACAATGACAACGTAAATAAACAAGTTTGTACCAATGGTTACTGCGATGATCTAGATGATAAAGTATCCTGTCAGCTACAAGATGTTATGCCAGAGATGGAACACAAGTGTCAGATTTGTGATGAATACTTTGCTAACAAAGATGATCTTCATGAGCATGCCTCAGCTCATGAAAGCGAACGACCATTTAGTTGTAATATTTGCGGGCAAAGATACGAACTGAAGGATCACCTAACCAAGCATATAACCGAGCATAATGAGGAAAAACCGTTCTCCTGTCCTAGTGATTGCAAATGTGATGTGTGCAGCAAAGAAATTCGTAACAAGCGAACATTGAAGTTCCACAACAATATTCATACCGGAGAGCGGCCGTTCAAATGCACTGTATGCGGAAAAAACTTTGTTACCAAAAGTGTCCTAAGCATACACATGTCTACACACACGGGTAATTATAAGCATAGTTGTGATGTATGTGGCAAAGGATTTGTGTATAAATCACGTTTGGATGATCACAAATACAGTCATACCGGAGAGCGGCCATACAAATGCACTGTGTGTGGAAAGATTTTTTCGACTAAAGTTACTCTAAGTTTACATTTCTCTTCACACACGGGTAACTATAAGTACGAGTGTGATGTTTGTGGCAAAGGATTCATGCAAAGATCAGGTTTGGAAAAACACAAAAGTAGTCATACGGAAGAGCGACCTTACAAATGCACAATATGCGAAAAAGATTTTAAAACCAAACGGTATTTTGACGCACATATGACGTTTCACACAGACGAGCGGCCTTACAAGTGCGCTGTATGTGGAAAAAGTTTTGCCTTTAACTATCGCCTGACTGCACACGAAGTCACACATACAGGCGATTATAAGTATACGTGTGACGTGTGCGGTAGAGGATACGTGCGACGTTCACGCTTGATAGACCACAAAAAGAGTCATATGAAAGAGCGGCCTTATCACTGCACTACATGCGGAATAGGTTTTGCAACTAAAGAAAGCCTAATCAAACATATGTCGATTCACATGAGAAGTCAACATAAATGTGAAGTGTGTGGCAAACAACACTCTAGAAAAGTTAGTTTGAAATTGCACAAATGCACTCATACATCTGATCAGTCGATTGATCCGTTACCAATCGAACCGACAGATCACGATCGCTTGATTCCAGCCAAACAGGAGAATATAACAATTGAACCAACAAAACTCGATGACAATGACAAGATCAATGAACAAACAACCATCAATAGCAACAGCGACGCATTCGATTTACAACCAAACCCACACGATCCTGTTGGCAGCAATGAGTTTGATCAATTTGAACAAGTATCCTTCCTGCTACAGGATGTCGTGTCAAAGAAGGAACACAAATGTCATATTTGTGGTGAATACTTTACCGACAAGAACGATCTCCGTGAGCATGCCTCAGTTCATGAAAGTGAGCAAGCATTTAGTTGCGATATTTGCGGACAAAGTTACGAATCGAAGGATCATCTAACCAAGCATATGACCGAGCATATTGAGTGTCCTAGTGATAAATACAAATGTGATGTGTGTGGCAAAGAGTTTCGTGACAACCAAACATTAAAGTTCCACAACAGTATTCACACCGGAGAGCGACCGTACGAATGCACAGTATGCGGAAAAAGCTTTGATCACAATCGCGTCATACTAGCCAAACAGGtgaatacaaaaaacgaatctacaAAACTCGATGACAGTGACAAGATCAACGAACAAATAAGTACTAATAGTAACAGCGACGTATTTGATTCACTACAAAACCCACACGATCCTGTTAGCAGCACTGAAACTGATCGAGATGAAAAGGTATCCAGCCAGCTACAGGATGTTATGTCAAAGAAGGAACACAAGTGTCAGATTTGTGGTGAATACTTTACCGAGAAGAACGACCTCCGTGAGCATGCCTCAGTTCATGAAAGCGAGCGACCATTTAGTTGTGATATTTTCGGGCAAAGTTATGAATTGAAGGATCACCTAACCAAGCATATGACCGAGCATATTGAGTGCCCTAGTGATTATAAGCATAAGCACAAATGCACTGTATGCGAAAAAATCTTTGTTACCAGCAGTACTCTAAGCGCACACATGTCTACACATACGGGTGATTATAAACATGTGTGTGATGTATGTGGCAAAGGTTTTGCGCAGAGAACGCGTTTGGATGATCACAAATACAGTCATACCGGAGAGCGGCCTTACAAATGCACGGTATGCGAAAAAGGTTTTAAAACCAAACCGACATTGGACATACACATGCTGATTCACACAGGAGATCGTCCGCACAAATGCACTGTATGTGGTAAAAGTTTTGCACTCAAACCTCGCCTGACTGCACACAAATCCACACATACGGGCGATTATAAGTATACGTGTGACGTGTGCGGCAAAGGATTCGTGAACAGTTCACGCTTGACAGATCACAAGTTCAACCATACGAAAGAGCGGCCATATCAATGCACTATATGCGGGAAAGGTTTTATCACTAGAACTAACCTAATCGTACACACGGCATCTATTCATACGAGTAGTCGACATAAATGTGAAGTATGTGGCAAAGAATATGTTAGGAAACATAACTTGAAATTACATAAACGCATTCATTCATCTGATCAGTCGATTGATCCGTTGCCAATCGAACCAACAGATCACGATAGCGACATTCTATCCAACCAGAAGAATATCAAAACCGAATCTACAAAATTCGATAACATTGACATAATCGATGAACAAACAAACACCAATAGCAATAGCGACACATTCGATTTACAACCAAACCCACAGGATCCTGTTAGCAGCAATGAAATTGATCTAGATGAAAAAGTATCCTGCCACCTTCAGGATGTTATGCCAGATTTGTAA
Protein Sequence
METTDHDSDILVKQENIITIEPTKLDDNDNVNKQVCTNGYCDDLDDKVSCQLQDVMPEMEHKCQICDEYFANKDDLHEHASAHESERPFSCNICGQRYELKDHLTKHITEHNEEKPFSCPSDCKCDVCSKEIRNKRTLKFHNNIHTGERPFKCTVCGKNFVTKSVLSIHMSTHTGNYKHSCDVCGKGFVYKSRLDDHKYSHTGERPYKCTVCGKIFSTKVTLSLHFSSHTGNYKYECDVCGKGFMQRSGLEKHKSSHTEERPYKCTICEKDFKTKRYFDAHMTFHTDERPYKCAVCGKSFAFNYRLTAHEVTHTGDYKYTCDVCGRGYVRRSRLIDHKKSHMKERPYHCTTCGIGFATKESLIKHMSIHMRSQHKCEVCGKQHSRKVSLKLHKCTHTSDQSIDPLPIEPTDHDRLIPAKQENITIEPTKLDDNDKINEQTTINSNSDAFDLQPNPHDPVGSNEFDQFEQVSFLLQDVVSKKEHKCHICGEYFTDKNDLREHASVHESEQAFSCDICGQSYESKDHLTKHMTEHIECPSDKYKCDVCGKEFRDNQTLKFHNSIHTGERPYECTVCGKSFDHNRVILAKQVNTKNESTKLDDSDKINEQISTNSNSDVFDSLQNPHDPVSSTETDRDEKVSSQLQDVMSKKEHKCQICGEYFTEKNDLREHASVHESERPFSCDIFGQSYELKDHLTKHMTEHIECPSDYKHKHKCTVCEKIFVTSSTLSAHMSTHTGDYKHVCDVCGKGFAQRTRLDDHKYSHTGERPYKCTVCEKGFKTKPTLDIHMLIHTGDRPHKCTVCGKSFALKPRLTAHKSTHTGDYKYTCDVCGKGFVNSSRLTDHKFNHTKERPYQCTICGKGFITRTNLIVHTASIHTSSRHKCEVCGKEYVRKHNLKLHKRIHSSDQSIDPLPIEPTDHDSDILSNQKNIKTESTKFDNIDIIDEQTNTNSNSDTFDLQPNPQDPVSSNEIDLDEKVSCHLQDVMPDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-