Mgen007544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:156098448-156100406[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6.7e-06 0.00053 21.5 0.1 1 23 65 87 65 87 0.98
2 21 0.00078 0.061 15.0 3.5 1 23 93 115 93 115 0.98
3 21 0.00029 0.023 16.3 0.5 1 23 121 143 121 143 0.97
4 21 2e-06 0.00016 23.2 0.8 1 23 149 171 149 171 0.99
5 21 6.8e-06 0.00053 21.5 1.5 2 23 177 198 176 198 0.98
6 21 5.3e-06 0.00042 21.8 1.9 1 23 204 226 204 226 0.97
7 21 2.2e-05 0.0017 19.9 1.7 1 23 232 254 232 254 0.99
8 21 2.9e-06 0.00023 22.6 0.1 1 23 260 282 260 282 0.99
9 21 0.23 18 7.3 2.9 1 21 288 308 288 310 0.91
10 21 2.7e-05 0.0022 19.6 3.8 1 23 316 338 316 338 0.97
11 21 1.5e-05 0.0012 20.4 0.3 1 23 344 366 344 366 0.98
12 21 0.0002 0.016 16.8 1.6 1 23 377 399 377 399 0.97
13 21 3.8e-05 0.003 19.1 3.5 1 23 405 427 405 427 0.99
14 21 9.7e-06 0.00076 21.0 0.4 1 23 433 455 433 455 0.99
15 21 5.9e-05 0.0046 18.5 0.6 1 23 461 483 461 483 0.97
16 21 4.8e-06 0.00038 21.9 0.2 1 23 489 511 489 511 0.98
17 21 0.00052 0.04 15.6 0.3 1 23 517 539 517 539 0.99
18 21 1.2e-06 9.7e-05 23.8 2.5 1 23 544 566 544 566 0.99
19 21 3.7e-05 0.0029 19.2 2.3 1 23 572 594 572 594 0.97
20 21 0.0051 0.4 12.4 8.3 1 23 600 622 600 622 0.98
21 21 6.2e-07 4.9e-05 24.7 1.4 1 23 628 650 628 650 0.98

Sequence Information

Coding Sequence
ATGGAATTTTGTCTTGAACGAGATGGGCTACTAAAAGAGGAAGAAGCAGAAAACAGCCCTGAAGCATTTTTCCCATCGCCCGCATCAACAATCGAATCCCCAATAAAACTCGAATATCAGATTTGTGATGAGGAATCCACACATAAAAGTGATCTTCATAAGGACGTCTTAACACCTAAAGAGGAACAGGTTTATAGTTGCGAAATTTGCGGAGAACAATTTTCATTGCAGTATGCCCTGAACCAGCATATGATCGTTCATACTGAAGAAAAACAATATAAGTGTAATGTGTGTGGCAAAGAATTTCAGTATTATCATCGATTGAAGGACCACACAAATATTCACACTGGTGAGCGTCCGTACAAGTGCATTGTATGCGGAAAAGAATTTGCCATTAAGCGTTACCTAACTAAACACATGTCTATTCACCCAAATGTGTACAAATATAAGTGCGAAGCATGTGGTAAAACCTTTCATGATAGTGTTGACCTCGCGAGACACCAACGCATTCATACGAACGAGAAGTCTAAATGCAGCATATGCGAGAAAGATTATACCAATAAGTACTATCTCAGCAGACATATGAAAATTCATGTGAACGGCTACAAGCATAAGTGTGATGTGTGTGGCAAAGGATTCACCTACAAATCACTTTTGAAAGATCACGAAAATAGTCACACAGGTGAACGGCCCTACAAATGTAGCGTCTGTGGGAAAGATTTTCAGGGTAAACTAAATCTAGCTCATCACATGCGCCAACACGCAAGCGTGCGACCGTACAAATGCACCGTATGTGGAGAAGATTTCGTCGTTCAATCTTTACTATCCAGACACATGCTCATTCACACGAATGATTATAAGCATATGTGTGACATTTGTGGCAAAGGATTTCTGACCAAAAAAGTCTTGAAAGATCATGAACGCTGTCATACAGGAGAGCGACCGTACAAATGCACTGTATGCGGAAAAGATTTCGCGACTAAATTTCACCTATCCAGACACAAGTTTATTCACGAAAGAGATTATAACTACAAGTGTGAAGTGTGTGGCAAAGCCTTTAATGATGGTGTTAACCTCGCGAAACACGAATGCGTTCATACAAACTATACTCATGTGGATGGGTACGAGCATAAGTGTGAGGTGTGCGGCAAAGGATTCATCTCCGTATCACTTTTGAAAGAACACGAACACAGTCACCCAGGTGAACGGCCTTACAAATGCACTGAATGCGGAAAGGACTTTTGTGTTGAAAGAAAACTTTTTTCGCACATGCGACTTCACACAAGCGAGCGACCGTTCAAATGTACCGTATGTGGAAAAGATTTTGTCGTTATGCCTTACCTAACTAAACACATGCTTACTCACACGAATTATAATAGGCATGAGTGTGATGTGTGTGGCAAAGGATTTATGACCAGAGCACTCTTGAGAGATCATAAACGCGCTCATACAGGAGAGCGACCGTTTAAATGCACCGTATGTGGAAAAGAATTTGCCATTAATGGTTACCTAACTAAACACATGGCTATTCACCAAAGTGAGTACAAATATAAGTGCGAAGTGTGCGGCAAAGCCTGGAATTACGGTGCCAACCTCATGAAACACAAACGCACTCATACGAACGAGAGGTTTAAATGCACCATATGCGAGAAAGATTTTTCCACTAAGTATTATCTCAGCACACACATGAAAGTTCATGTGGATGATTACGAGCATAAGTGTGATGTGTGCGGCAAAGGGTTCATCTCCAAATCCCTTTTGACAGACCACGAACATAGTCACACAGGTGAACGGCCTTACAAATGCACTGTATGCGGAAAAGACTTCCATCAGAAAAGAAAACTTTCTTTACACATGCATCATCACACAAGCGAACGACCGTACAAATGCACCGTATGTGGAAAAGATTTTACTACTAAGAATTACCTAAATGAGCACATGCTTAACCATACGACATAA
Protein Sequence
MEFCLERDGLLKEEEAENSPEAFFPSPASTIESPIKLEYQICDEESTHKSDLHKDVLTPKEEQVYSCEICGEQFSLQYALNQHMIVHTEEKQYKCNVCGKEFQYYHRLKDHTNIHTGERPYKCIVCGKEFAIKRYLTKHMSIHPNVYKYKCEACGKTFHDSVDLARHQRIHTNEKSKCSICEKDYTNKYYLSRHMKIHVNGYKHKCDVCGKGFTYKSLLKDHENSHTGERPYKCSVCGKDFQGKLNLAHHMRQHASVRPYKCTVCGEDFVVQSLLSRHMLIHTNDYKHMCDICGKGFLTKKVLKDHERCHTGERPYKCTVCGKDFATKFHLSRHKFIHERDYNYKCEVCGKAFNDGVNLAKHECVHTNYTHVDGYEHKCEVCGKGFISVSLLKEHEHSHPGERPYKCTECGKDFCVERKLFSHMRLHTSERPFKCTVCGKDFVVMPYLTKHMLTHTNYNRHECDVCGKGFMTRALLRDHKRAHTGERPFKCTVCGKEFAINGYLTKHMAIHQSEYKYKCEVCGKAWNYGANLMKHKRTHTNERFKCTICEKDFSTKYYLSTHMKVHVDDYEHKCDVCGKGFISKSLLTDHEHSHTGERPYKCTVCGKDFHQKRKLSLHMHHHTSERPYKCTVCGKDFTTKNYLNEHMLNHTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-