Mgen007572.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:156399515-156401841[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.1e-05 0.00087 20.8 0.4 1 23 79 101 79 101 0.99
2 24 0.049 3.9 9.3 0.8 3 23 109 129 109 129 0.95
3 24 0.00014 0.011 17.3 1.3 1 23 135 157 135 157 0.99
4 24 0.00034 0.027 16.1 2.5 1 23 163 185 163 185 0.98
5 24 8.4e-07 6.6e-05 24.3 3.3 1 23 191 213 191 213 0.98
6 24 0.15 12 7.8 1.2 3 23 221 241 221 241 0.97
7 24 9.5e-05 0.0074 17.9 1.1 1 23 247 269 247 269 0.99
8 24 0.00014 0.011 17.3 2.6 1 23 275 297 275 297 0.98
9 24 7.9e-06 0.00062 21.3 1.0 1 23 303 325 303 325 0.98
10 24 4.7e-05 0.0037 18.8 0.6 1 23 331 353 331 353 0.98
11 24 6.6e-05 0.0052 18.4 2.3 1 23 359 381 359 381 0.96
12 24 0.00066 0.052 15.2 5.6 1 23 387 409 387 409 0.98
13 24 0.009 0.71 11.6 2.3 1 23 415 437 415 437 0.97
14 24 8.8e-08 6.9e-06 27.4 2.5 1 23 443 465 443 465 0.98
15 24 2e-05 0.0016 20.0 2.1 1 23 471 493 471 493 0.98
16 24 1.2e-06 9.8e-05 23.8 0.7 1 23 499 521 499 521 0.99
17 24 0.004 0.31 12.8 0.1 1 23 527 549 527 549 0.93
18 24 0.00047 0.037 15.7 0.3 1 19 555 573 555 577 0.93
19 24 1.2e-06 9.7e-05 23.8 7.4 1 23 583 605 583 605 0.97
20 24 3.4e-07 2.7e-05 25.6 1.9 1 23 611 633 611 633 0.98
21 24 1e-06 7.9e-05 24.1 2.1 1 23 639 661 639 661 0.98
22 24 1.2e-06 9.7e-05 23.8 2.0 1 23 665 687 665 687 0.98
23 24 1.4e-06 0.00011 23.7 0.6 1 23 693 715 693 715 0.98
24 24 0.00042 0.033 15.8 4.7 1 23 721 743 721 743 0.96

Sequence Information

Coding Sequence
ATGCAGGTTAATAATTGTTCATCAGAAAATATCACAAAATGCGAACCCGAGGATTTGGAGCGAATTGCGTACGATTCAGGCAACTGCAATGAAGTTTCACGAAGTGATATGCAAACTTGCAATGCACCGGAATCATCGAAATCTCCAGAACCAGTTATTGATGCGTGTAATGAAGAAATTAGTAACGATACGGATTTGACGAACCAAAAAAGTATGCATACCGGTGAGCGACCATACAAATGTACGGAATGTGAAAAGGATTTTGCCGCTAAAGCGTACCTAACTATGCACATGCGTATCCACAAAGGTGCTTATAGACATTGGTGTGATGTGTGCGGCAAAGGATTCATGCTTAAATTACACTTGAAAGACCATGAATACATACACAGAAATGAACGGCCGTATAAGTGTACTATATGCGAAAAAGATTTGACCAGTAAACTTGCTTTTACTAGACATATGTCTACTCACTCCGACGGGTATCAGTATACGTGTAATGTTTGTGGCAAAGGCTTTCATATTCGTACGAATTTCAAGAGTCACGAACGCATTCATTCAAGTGAGCGACCGCACAAATGTACGGTATGTGAGAAACGATTTGTCACCAAAGGCTACCTAACCAAGCACATGCGTATTCATAAAGGTGCTTATCGGCATTGGTGTGACATATGCGGCAAAGGATTCATGATCAGATTACACTTCAAAGATCATGAATCCATGCACAAAGGGGAACGACCGTATAAATGTACTATATGCGAAAAAGACTTTTCCAGTAAACTTGGCTTTACTGGACACATGTCTACTCATTCGGACGAGTATCGGTATACGTGTAAAGTATGTGGCAAAGGTTATCATATCCGTTCAAATCTCAAGAATCatgaacgcaatcattccattgAGCAACTGTTCAAATGCAGCGTATGTGATAAAGCTTTTCGACTCAAAAAAAGTCTTGACATACACATGCGTCTTCACACAGGCGAGCGGCCTTTCATGTGCACTGTTTGCGGAAAAGATTTTCTCACCGTGTCTAACTTAACTAGTCACATGTCTACTCATAAGAGCGTAGACAGACATAAATGTGATGTGTGCGGAAAAACGTTCAGAATTAAATCACTCCTGAAAGACCACGAATACAGCCATACTGGCGAACGGCCCTACAAATGCACTGTATGTGGAAATGATTTTGCCTCTAAGCATTGCCTTATCAAACACATGCATATTCACACGAGTGACTACAAGCATAAGTGCGGTATTTGCGAGAAAGAATTTATGATCAAAGCACACTTGACAGAGCATGAATACACCCATACAGGTCAGCAACCCCATCAATGCACCGTGTGTAGCAAAGGTTTCTCGCGCAAATCCAATTTAACCATACACATGCGCATCCATACGGCCGAACTATCCTTTAAATGCTCCATATGTGACACCAAATTTACCTCTAAACTGTCTCTAACGAGACATACGTCGGTACATATGGGAGATTATCGTTATAAGTGCGATATGTGTGGCAAAGGATTCACTGCTAGCTCATATTTGAAGATACACGAGCGCACTCATACTGGCGAGCGACCGTACAAATGCACCGTATGCGAAAAAGATTTTGCTACCAAACTTGGTCTCGCAGGACACATGCCCACTCACACGGGTAATTATCGATACAATTGTGAAGTGTGCGGCAAAGGCTTTCAGGACCTTTCCAACATGAAGAAGCACGATCTCATCCATACAAATGCGCGACCGTTTGCATGCAGCGAATGTGACAAATGTTTCAATCGCAAACATCAACTGAAACAACATATGCGCCGCCATACCGGTGAACGACCGTATAAATGCACCGTATGCGGAAAAGATTTTATCACTAGCTCCAGCCTCACCCATCACATGACTATTCACAAGGGCGATTACAGCCATAAGTGCGAGGTGTGCGGTAAAGGTTTCGTAAATAAATCACAACTAAAAATGCACGAACGCAGACATGAACGGCCACATCAATGCACCGTGTGTAACAAACGATATTCTAACGAAAGTGATTTAAACGTACACATGCGGCTCCATAAGAGCGAACTGACGTATAAATGTACCGTATGCGAGAAAAATTTTTCCACCAAACCTGCTCTTACTAACCATATGTCCATTCACACGGATGAGTATCGTCATCGGTGTGGTATGTGTGGCAAAGGATACGTTAGAAAGTACAGCTTGAAAAAGCACAATTGCATTCACAGTGCTGGTGGATGCTGA
Protein Sequence
MQVNNCSSENITKCEPEDLERIAYDSGNCNEVSRSDMQTCNAPESSKSPEPVIDACNEEISNDTDLTNQKSMHTGERPYKCTECEKDFAAKAYLTMHMRIHKGAYRHWCDVCGKGFMLKLHLKDHEYIHRNERPYKCTICEKDLTSKLAFTRHMSTHSDGYQYTCNVCGKGFHIRTNFKSHERIHSSERPHKCTVCEKRFVTKGYLTKHMRIHKGAYRHWCDICGKGFMIRLHFKDHESMHKGERPYKCTICEKDFSSKLGFTGHMSTHSDEYRYTCKVCGKGYHIRSNLKNHERNHSIEQLFKCSVCDKAFRLKKSLDIHMRLHTGERPFMCTVCGKDFLTVSNLTSHMSTHKSVDRHKCDVCGKTFRIKSLLKDHEYSHTGERPYKCTVCGNDFASKHCLIKHMHIHTSDYKHKCGICEKEFMIKAHLTEHEYTHTGQQPHQCTVCSKGFSRKSNLTIHMRIHTAELSFKCSICDTKFTSKLSLTRHTSVHMGDYRYKCDMCGKGFTASSYLKIHERTHTGERPYKCTVCEKDFATKLGLAGHMPTHTGNYRYNCEVCGKGFQDLSNMKKHDLIHTNARPFACSECDKCFNRKHQLKQHMRRHTGERPYKCTVCGKDFITSSSLTHHMTIHKGDYSHKCEVCGKGFVNKSQLKMHERRHERPHQCTVCNKRYSNESDLNVHMRLHKSELTYKCTVCEKNFSTKPALTNHMSIHTDEYRHRCGMCGKGYVRKYSLKKHNCIHSAGGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-