Mgen007987.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:163273765-163276062[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 3.9e-06 0.00031 22.2 0.8 1 23 64 86 64 86 0.98
2 25 0.00064 0.05 15.3 1.2 1 23 92 114 92 114 0.97
3 25 9.9e-05 0.0077 17.8 2.9 1 23 120 142 120 142 0.98
4 25 0.00021 0.016 16.8 0.2 1 23 148 170 148 170 0.97
5 25 2.3e-06 0.00018 23.0 0.2 1 23 176 198 176 198 0.98
6 25 3.8e-07 3e-05 25.4 2.5 1 23 203 225 203 225 0.99
7 25 1.7e-05 0.0013 20.2 1.4 1 23 231 253 231 253 0.97
8 25 9.5e-05 0.0074 17.9 4.6 1 23 259 281 259 281 0.98
9 25 5.2e-06 0.00041 21.8 0.2 1 23 287 309 287 309 0.99
10 25 2.2e-05 0.0017 19.9 0.3 1 23 315 337 315 337 0.97
11 25 3.9e-06 0.0003 22.2 1.4 1 23 343 365 343 365 0.98
12 25 0.00063 0.05 15.3 2.9 1 23 371 393 371 393 0.97
13 25 6.7e-06 0.00052 21.5 1.6 1 23 399 421 399 421 0.97
14 25 1.6e-05 0.0013 20.3 1.8 1 23 427 449 427 449 0.98
15 25 1.3 1e+02 4.9 0.0 7 23 466 482 466 482 0.92
16 25 3.7e-06 0.00029 22.3 0.4 1 23 488 510 488 510 0.99
17 25 0.0001 0.008 17.8 1.6 1 23 516 538 516 538 0.97
18 25 1.3e-06 0.0001 23.7 1.5 1 23 544 566 544 566 0.98
19 25 0.0001 0.0082 17.7 1.3 1 23 572 594 572 594 0.99
20 25 2e-07 1.6e-05 26.3 0.7 1 23 599 621 599 621 0.98
21 25 0.024 1.9 10.3 5.7 1 23 627 649 627 649 0.96
22 25 4.4e-05 0.0035 18.9 2.1 1 23 655 677 655 677 0.99
23 25 0.0056 0.44 12.3 5.3 1 21 683 703 683 705 0.94
24 25 1.4e-06 0.00011 23.6 1.0 1 23 711 733 711 733 0.98
25 25 0.0057 0.45 12.3 0.3 1 23 739 761 739 761 0.96

Sequence Information

Coding Sequence
aTGGAGGTTTGCCTTGCACGAGATGGGATACTAGAAACGGAAGAAACAGAAAACAGTTCTGTAGCCTTTTCCTCATCATCCGCTCCAACAATCGATTCGCCAATAAAACTCGAATATGAGATTGGTGATGAGGAATTCACTCAGAAAAGTGATCATGAAGACGTCTTAGTACCGAAAGAGGAACAGATTTACAGTTGCGAAATTTGCGAGAAAcaattttctttcaagaatGCCCTGAAGAAGCATATGATCGTTCATACTGAAGACAAACCATTTCAGTGTAATGTGTGTGGCAAAGGATTCCAGTATTATCAGAAATTAAAGGACCACAGCAATATTCACACTGGTGAACGTCCCTACAGTTGCACTGtatgcgaaaaaaaattttcgtctaAAAAGATGCTTGGTCAACACATGCATATTCACACAAGCCAGCTCTCGTACAAATGCATTGTATGCGGGAAAGAATTTGCCATTAAGGCTTACTTAACTAGACACATGTCTATTCACCAAAGTTTGTTCAAATATAAATGCGAAATGTGTGGCATAGGCTTTAATGATGCTGCTAACCTAACAAAACACAAACGCCTTCATACGAACGAAAAGTATAAATGCACCATTTGCGAGAAAGATTTTTCCAATAAGTATTATCTCAGCAGACACATGAAAATTCACGTGGATGGCTTCGAGCATAAGTGTGATGTGTGTGGCAAAGGATTCACCTCCAAATCAGTTTTGAAAGACCACGAAAACAGTCACACAGGTGAACGGCCTTACAAATGCACTGTCTGTGGAAAAGACTTTCATCGTAAAACAAAACTTTCTATACACATGAAATTTCACACAAGCGAGCAATCGTACAAATGCACCATATGTGGGAAGGATTTCGCCTTCATGGCTAATCTATCCCAACACATGCTTATTCACACGAATGATTATAAGCATGAGTGTGACGTGTGTGGCAAAGGATTTGTGACCAGAGCACTCTTGGAAGATCACAAACGCCTTCATACAGGAGAACGACCGTATAAATGCACCGTATGTGGAAAAGATTTCATCACTCGGTATTTCCTATCCAGACACATGCTTCTTCACACGAATGATTATAAGCATAAGTGTTACATTTGTGGCAAAGGATTTATGACCAAAAAACGCTTGCAAGATCATGAACGCCTTCATACAGGAGAGCGACCGTATAAATGCACTGTCTGTGGAAAAGACTTCGCGACTAACTATTACCTATCCAGACACAGGTTTATTCACGGAAGAGATCATAGGTACAAGTGTGAAGTGTGTGGCAAAGGCtttcatgagagtactaacctCGCGAGACACATACACATTCATACTAACGACATTCATGTGAATAGTAACGAGAATAAGTATGAAGTGCGCGGCGAAGGATTCAACTCCAAATCACTTTTGGAAGACCACGAAAATAGTCACGCAGGTGAACGGCCTTATAAATGCACTGTATGCGGAAAAGATTTCGTCGTTATGGCTTACCTGACAAAACACATGCTTACTCACACGGATGATTACAATCATAAGTGTGACGTTTGCGGCAAAGGATTTGTGACCAGAAAACGCTTGACAGATCATGAACGCCTTCATACAGGAGAGAGACCGTTCAAATGTACTGTATGTGAAAAAGATTTCTCGACTAAGGTTTACCTAACTAGACACATGTCTATTCACCAAAGTGAGTTCAAATATAAATGCGAAGTGTGTGGCAAAGCCTGGAATAATTGTGCTAACCTAACGAAACACAAACGCATTCATACAAACGAGAAGTTTGAATGCACTATATGCGAGAAAGATTTTTCCAATAAGTATAATCTCAGCGCACACATGAAAATCCACATGGATGATTACGAGCATAAGTGTGATGTGTGCGGCAAAGGATTCACCTGTAAATCACTTTTAAAAGACCACGGACATAGCCACACAGGTGAACGGCCTTACAAATGCACCGTATGTGGGAAAGATTTCGCCGTAACGGCTTGCTTTACTAAACACATGCTTACTCACACGGATGATTATAAGCATAAGTGTGACTTTTGTGGCAAAGGTTTTGTGACCAGGAATCTTCTGAAAGATCATAAACGCTGTCATACAGGAGAGCGACCGTACAAATGCACTGTATGTGGGAAAGCTTTCGCGTCTAAAACTTACCTATCCAGACACAGGTCTATTCACGAAAGGGATTACAAGTACAGGTGTGAAGTGTGTGGTAAAGGcatgaacgatagttctggctTCGCAAAACACAAAAGCCTTCATACGAACGAGAAGTAA
Protein Sequence
MEVCLARDGILETEETENSSVAFSSSSAPTIDSPIKLEYEIGDEEFTQKSDHEDVLVPKEEQIYSCEICEKQFSFKNALKKHMIVHTEDKPFQCNVCGKGFQYYQKLKDHSNIHTGERPYSCTVCEKKFSSKKMLGQHMHIHTSQLSYKCIVCGKEFAIKAYLTRHMSIHQSLFKYKCEMCGIGFNDAANLTKHKRLHTNEKYKCTICEKDFSNKYYLSRHMKIHVDGFEHKCDVCGKGFTSKSVLKDHENSHTGERPYKCTVCGKDFHRKTKLSIHMKFHTSEQSYKCTICGKDFAFMANLSQHMLIHTNDYKHECDVCGKGFVTRALLEDHKRLHTGERPYKCTVCGKDFITRYFLSRHMLLHTNDYKHKCYICGKGFMTKKRLQDHERLHTGERPYKCTVCGKDFATNYYLSRHRFIHGRDHRYKCEVCGKGFHESTNLARHIHIHTNDIHVNSNENKYEVRGEGFNSKSLLEDHENSHAGERPYKCTVCGKDFVVMAYLTKHMLTHTDDYNHKCDVCGKGFVTRKRLTDHERLHTGERPFKCTVCEKDFSTKVYLTRHMSIHQSEFKYKCEVCGKAWNNCANLTKHKRIHTNEKFECTICEKDFSNKYNLSAHMKIHMDDYEHKCDVCGKGFTCKSLLKDHGHSHTGERPYKCTVCGKDFAVTACFTKHMLTHTDDYKHKCDFCGKGFVTRNLLKDHKRCHTGERPYKCTVCGKAFASKTYLSRHRSIHERDYKYRCEVCGKGMNDSSGFAKHKSLHTNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-