Mgen007578.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:156468378-156471211[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 6.1e-06 0.00048 21.6 1.8 2 23 84 105 83 105 0.97
2 25 8.7e-05 0.0069 18.0 3.5 1 23 111 133 111 133 0.98
3 25 0.00017 0.013 17.1 2.6 1 23 139 161 139 161 0.99
4 25 3.4e-07 2.7e-05 25.6 0.3 1 23 167 189 167 189 0.98
5 25 0.022 1.8 10.4 6.2 1 23 195 217 195 217 0.97
6 25 7.4e-06 0.00058 21.4 1.7 1 23 222 244 222 244 0.98
7 25 2.3e-06 0.00018 22.9 1.9 1 23 248 270 248 270 0.98
8 25 4.9e-07 3.9e-05 25.1 0.7 1 23 276 298 276 298 0.98
9 25 5.4e-06 0.00042 21.8 2.1 1 23 304 326 304 326 0.97
10 25 1.7e-07 1.3e-05 26.5 2.4 1 23 332 354 332 354 0.99
11 25 0.00018 0.014 17.0 5.2 1 23 360 382 360 382 0.98
12 25 3.1e-05 0.0024 19.4 1.7 1 23 385 407 385 407 0.99
13 25 7.2e-07 5.7e-05 24.5 3.7 1 23 412 434 412 434 0.99
14 25 4.4e-06 0.00035 22.1 1.1 1 23 440 462 440 462 0.99
15 25 4.8e-07 3.8e-05 25.1 2.9 1 23 468 490 468 490 0.97
16 25 5.7e-06 0.00044 21.7 1.4 1 23 498 520 498 520 0.99
17 25 8.4e-05 0.0066 18.0 0.4 1 23 525 547 525 547 0.99
18 25 4.6e-05 0.0036 18.9 1.6 1 23 553 575 553 575 0.98
19 25 0.00029 0.022 16.4 0.1 1 23 581 603 581 603 0.98
20 25 0.022 1.7 10.4 6.6 1 23 609 631 609 631 0.98
21 25 0.004 0.32 12.8 0.2 1 23 636 658 636 658 0.98
22 25 2.9e-06 0.00023 22.6 1.5 1 23 664 686 664 686 0.98
23 25 5.3e-05 0.0041 18.7 0.4 1 23 692 714 692 714 0.99
24 25 0.00057 0.045 15.4 4.2 1 23 720 742 720 742 0.98
25 25 3.5e-05 0.0027 19.2 5.7 1 23 748 770 748 770 0.97

Sequence Information

Coding Sequence
ATGCAGAAAAATGAACACTTACGAGAACATTTCGACGTATGTAGCGAAGAGTTCGATTTAGATCAGAAAGTATTCGATTCTGATATCGGTAATGAAATTACTCGCAGtgataACAAACCTGACCATGCACCGGATGTGGTAACAATGAAAGAGGAACCATCAAATAACTCGAAAGAGCCATTCACTGTAACAACCGATCCACCAAAGCAACAAGAATGTCCAATCGATGACAAACAATCCGCTATGCTTCGTTGCGACATTTGCGATAAAACATTTGAACATAAATACAGGCTAATTAACCACATGAACATTCATACTTCTACCAAACCATACACATGCGATATATGTGGGAAAGGATTCCACCATAAGCAGTCATTGAAGCTCCATACACTCATTCATACCGGTGAACGGTCGTATAAATGCACTGTAtgcgaaaaaggattttttgctAAAACTACTCTCACCCATCACATGAATGTACACACAGGCGAGCGGCCGTATAAATGCAATGTTTGCGGAAAAGATTTCGCCGATAGTTCTAATCTATCTAAACATGTGTCTATTCACGAAAGCGAGTACCGGTATAAGTGTGACGTGTGTGGCAAAGGATTCCATCATAGTTTCAGATTCAAGAGCCATAAAAGCATTCATGCAGGCGTAGTGTACAGTTGTACCGTATGCGAGAAAAAGTTTACCATCAAATCTAACCTATCGAAACACATGTATATCCACAAGGATGACTACAAATGTGATGTGTGCGGTAGAAGATTCACAAGCAGATCTCTTCTGGAAAATCACAAGTTCACTCATTCTGGGGAGCATCCTTACAAATGCACTGTTTGCGGAAAGATTTTATCCACCAACTCTAACCTAAAAAAGCATCTGTCAATACATAATGGTGATTACCGTCATAAGTGTGAGGTGTGTGGCAAAGGATTCATAGTCAAATCACACCTGAAAGCCCACCAAATCTATCACACCGGTGAACGGCCGTATCGATGCACTATATGCGAGAAAAATTTTACCAGTAGCTCTAACCTAACGACCCACATGTACACTCACACGGGTGAATACCGGCACAAGTGTCAGTTGTGCGGCAAAGGATGCACGAACAAATTTCAACTGCAAGCGCACGAACGAAGACATTCGGGTTATCAGTGCACCGTGTGTGAAAAACGGTATACTAGTTTAGCCTATTTCAAACTGCACATGCGCCTTCACGATGTCGGTGGCTTTAAATGTAACATATGTGACAGAAATTTCAAAACCAAACGTAATCTTACTATACACACGCGGAAACATACGGGCGAGCGAAAATACAAGTGCGATGTGTGTGACAAAATGTTTGATTACCGCTCCCAATTTACGGTACACGAACGCGTTCATACCGAAGAGCGCCCCTTCAAGTGTAGCATATGTGATAGAACCTTCCGAAGCAATACCAATCTGACCAAACATATGTTCCTTCACACCGATGAGCGGCCCTACAGTTATAAGTGTGAAGTGTGTGGCAAAGGTTTCTATCATCGTTCAGCCTTTATGAACCACGCTCGCATTCACACGGGCGAAGTTTATAAATGTTCCATATGCGAAAAGGTGCTCGCCAGTCACCCGAGCCTTACGCAGCACATGTTAATTCATAAGGATGATTACCAGCATAAGTGTGATGTATGcggcaaaggattcagaatcaaATCACGCTTGAGGGAACATCAAAACATCCACACGGgacaacgtccttacaaatgttcCGTGTGCGGAAGGGGGTTTCTTTCCAACTCGGTCCTAaccaatcacatggccattcACACGGGTGACTATCGTTATAAGTGTGAGGTGTGTGGCAAAGGCTATCATAATCATTTGAAGTTTAAGAATCACCAACGCTTCCATACGGACAAGAAGTATAAATGTTCTATATGCGAAATGGTTCTACCCACCGATACCAGTCTATCCAATCACATGACTAGTCACACTGGTTATGTTCGGTATGAGTGCGATGTTTGTGGCAAAGGATTCAGTGTACTTTCACACTTGAACAGACACAAATACACGCACGCGAGTGAGAGACCGTTCAAGTGCGTCGTATGCGACAAAGATTTTAAACTCGAAACAACTCTTGCCAGCCATATGCGTGTTCATTCGAACGAGCGGCCACATAAATGCACTGCGTGTGAAAAAAGTTTCCACACTAACTATGGTCTCAAATCGCACATGTTGATTCACACGGGTGACAGTCGGCATGAGTGTGATGTGTGTGGCAAAAAATTCACCAGGAATTATTGCTTGAAGTTACACAAACGCATTCATACAACGGAGTCAGCATCAGATTGCGCCGTGTGA
Protein Sequence
MQKNEHLREHFDVCSEEFDLDQKVFDSDIGNEITRSDNKPDHAPDVVTMKEEPSNNSKEPFTVTTDPPKQQECPIDDKQSAMLRCDICDKTFEHKYRLINHMNIHTSTKPYTCDICGKGFHHKQSLKLHTLIHTGERSYKCTVCEKGFFAKTTLTHHMNVHTGERPYKCNVCGKDFADSSNLSKHVSIHESEYRYKCDVCGKGFHHSFRFKSHKSIHAGVVYSCTVCEKKFTIKSNLSKHMYIHKDDYKCDVCGRRFTSRSLLENHKFTHSGEHPYKCTVCGKILSTNSNLKKHLSIHNGDYRHKCEVCGKGFIVKSHLKAHQIYHTGERPYRCTICEKNFTSSSNLTTHMYTHTGEYRHKCQLCGKGCTNKFQLQAHERRHSGYQCTVCEKRYTSLAYFKLHMRLHDVGGFKCNICDRNFKTKRNLTIHTRKHTGERKYKCDVCDKMFDYRSQFTVHERVHTEERPFKCSICDRTFRSNTNLTKHMFLHTDERPYSYKCEVCGKGFYHRSAFMNHARIHTGEVYKCSICEKVLASHPSLTQHMLIHKDDYQHKCDVCGKGFRIKSRLREHQNIHTGQRPYKCSVCGRGFLSNSVLTNHMAIHTGDYRYKCEVCGKGYHNHLKFKNHQRFHTDKKYKCSICEMVLPTDTSLSNHMTSHTGYVRYECDVCGKGFSVLSHLNRHKYTHASERPFKCVVCDKDFKLETTLASHMRVHSNERPHKCTACEKSFHTNYGLKSHMLIHTGDSRHECDVCGKKFTRNYCLKLHKRIHTTESASDCAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-