Mgen007997.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Malaya genurostris
Gene Symbol
-
Assembly
GCA_030247185.2
Location
CM058071.2:163337838-163340117[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.79 62 5.5 0.0 5 17 41 53 40 54 0.90
2 26 2.6e-05 0.0021 19.6 0.3 1 23 65 87 65 87 0.98
3 26 3.5e-05 0.0027 19.2 1.1 1 23 93 115 93 115 0.98
4 26 0.0051 0.4 12.4 0.3 1 23 121 143 121 143 0.97
5 26 0.0002 0.016 16.8 0.3 1 23 149 171 149 171 0.96
6 26 3.1e-08 2.4e-06 28.9 1.1 1 23 177 199 177 199 0.99
7 26 5.2e-06 0.00041 21.8 0.8 2 23 205 226 204 226 0.97
8 26 0.0015 0.12 14.1 1.5 2 23 233 254 232 254 0.96
9 26 2.3e-05 0.0018 19.8 2.9 1 23 260 282 260 282 0.98
10 26 3.7e-05 0.0029 19.2 0.1 1 23 288 310 288 310 0.98
11 26 5.4e-07 4.2e-05 24.9 1.1 1 23 316 338 316 338 0.98
12 26 8e-06 0.00063 21.3 2.2 1 23 343 365 343 365 0.99
13 26 5.3e-05 0.0041 18.7 1.2 1 23 371 393 371 393 0.97
14 26 9.5e-06 0.00074 21.0 2.1 1 23 399 421 399 421 0.98
15 26 2.2e-06 0.00017 23.0 1.7 1 23 427 449 427 449 0.98
16 26 0.0002 0.016 16.9 2.2 1 23 455 477 455 477 0.96
17 26 1.7e-05 0.0013 20.2 1.6 1 23 483 505 483 505 0.99
18 26 2.5e-05 0.002 19.7 0.7 1 23 511 533 511 533 0.98
19 26 2.2e-06 0.00017 23.0 2.8 1 23 538 560 538 560 0.99
20 26 5.7e-05 0.0044 18.6 3.6 1 23 566 588 566 588 0.97
21 26 0.00044 0.034 15.8 7.8 1 23 594 616 594 616 0.98
22 26 0.00028 0.022 16.4 5.8 2 23 623 644 622 644 0.97
23 26 5.1e-06 0.0004 21.9 1.1 1 23 650 672 650 672 0.97
24 26 3.1e-05 0.0024 19.4 0.4 1 23 678 700 678 700 0.99
25 26 3.4e-06 0.00026 22.4 0.2 1 23 705 727 705 727 0.98
26 26 0.00031 0.024 16.3 0.6 1 23 733 755 733 755 0.98

Sequence Information

Coding Sequence
ATGGAATTTGGCTTTGACCGAGAGGCAACACTAAAAAAGGAAGAACTAGAAAACAGCACCGCAGTCTTTTCCTCGTCGCCCGCTCCAACAATCGATTCCCCAATAAAACTCGAATATCAGATTTGTGATGAGGAATTCACACAGAAAAGCGATCTTCATAAAGACGACTTAATACCTAAAGGGGAGCAGGTCTATAGTTGCGAAATTTGTGGGGAACAATTTTCATTGAAGAAAGCCATGAAGAAACATATGATCGTTCATACTGAAGACAAACAGTTTAAGTGTAATGTCTGTGGCAAAGGATTCCGAGATTATCAGCGCTTAAAGGACCACACAAATATTCACACTGGAGAGCGTCCGTACAATTGCACTGCATGCGAAAAAAACTTCTGGTCTAAAGAGATGCTTGCTCGACACATGCTCATTCACACGAGCCAACGTTCGTTCAAATGTATTGTATGCGGAAAAGAGTTTGCCATTAAGGATTACCTAACTAAACATATGTCTATTCACCAAAATGAGTGCAAATATAAGTGCGAAGTGTGTGGCAAAACCTTTTATCGTAGTGCTAACTTGGAAAGACATAAACGCATTCATACGAACGAGAATATTAAATGCACAATATGCGGGAAAGATTATACCAATGAGTATTCTTTTAGCAGACACATGAAAATTCACGTGAATGATTACGAGCTTAAGTGTGATGTGTGCGGCAAAGGATTCACCTGCAAATCACTTTTGAAAGATCATGAACTTAGTCACACAGGTGAACGGCCTTACAAATGCACGGTATGTGGAAAAGACTTTCGtcgtaaaatgaaattttctctaCACATGAAACTTCACACAAACGAGCGACCTTACAAATGTGCCGTATGTGGAAAAGATTTCGTCGTTATGGCTTACCTAACTAAACACATGTCTATTCACCAAAGTGTGTACAAACATAAGTGCGAAGTGTGTGGCAAAGCCTTTAATAATAGTGGTAACTTCGCGACACACCAACGCATTCATATGAACGAAAAGTTCAAATGCACCGTATGCGAAAAAGATTTCTCCAATAAGTATTCTTTTGGCAGACACATGAAAATTCACGTGGATGGTTACAAACATAAGTGTGATATGTGCGGCAAAGGATTCATCAGCAAATCAGTTTTGAAAGACCACGAAAATAGTCACACAGGTGAACGACCTTACAAATGTACTGTATGCGGAAAAGACTTTCATAGTAAAATTAATCTTTCTGTACACATGCAAAATCACACAAGCGAGCGACCGTACGAATGCACCGTATGTGGgaaaaatttcgttttcatGTCTTACCTAACTAGACACATGCGTTTTCATACGAATGATTACAGGCATGAGTGTGATGTGTGTGGCAAAGGATTCATGACCAGATCACTCTTGAAAGACCACGAACACAGTCATACAGGCGAGCGACCATACAAATGTACCGTATGTGGAAAAGAATTTGCTCTTAAGGGTTGTTTAATTCAACACATGTATACTCACCAAAGTAAGCACAAATATAAGTGTGAAGAATGTGGCAAAGCCTTTCATAATGGTGCTAACCTGGTGAGACACAAAAGCATTCATACGAACGAGAAGTTTAAATGCACCATATGCGAGAAAGATTATACCACTAAGTATGATTTCAACAGACACATGAAAATTCACGTGGATGGTTACGAGCATAAGTGTGATGTTTGCGGCAAAGGATTTATCTCCAAATCACTTTTGAAAGACCACAAACATAGTCACACAGGTGAACGTCCCTACAAATGCACAATATGCGGAAAAGACTTTCATCAGAAAAGAAATCTTTCTTTACACATGCACCATCACACAAGCGAGCGACCGTGCAAATGCACTGTTTGTGGAAAAGATTTCGCCATTAGGTGTTATTTAACCAGACACATGCGTAAACATACAAATGATTATGAGCATAAGTGTGATGTGTGCGGCAAAGGATTCGTTTCCAAATCACTTTTGAAAGACCACGAAAATAGTCATACCGGTGAGCGGCCTTATAAATGCACCGTATGTGGAAAAGATCTCGCCACTATGGCTTACCTAtacaaacacatgcgtattcacACTGATGATAAGTATGAGTGTGATGTTTGTGGCAAAGGTTTCGCGACTACTACTAACCTATCCAGACACAGGCTTATTCACGAAAGTGAATGCAAGTACAAGTGTGAAGTGTGTGGCAAAGGCATGAATGATAGTTCAAGCTTCGCAAAACACAAACGCCTTCATACGGACGAGAAGTAA
Protein Sequence
MEFGFDREATLKKEELENSTAVFSSSPAPTIDSPIKLEYQICDEEFTQKSDLHKDDLIPKGEQVYSCEICGEQFSLKKAMKKHMIVHTEDKQFKCNVCGKGFRDYQRLKDHTNIHTGERPYNCTACEKNFWSKEMLARHMLIHTSQRSFKCIVCGKEFAIKDYLTKHMSIHQNECKYKCEVCGKTFYRSANLERHKRIHTNENIKCTICGKDYTNEYSFSRHMKIHVNDYELKCDVCGKGFTCKSLLKDHELSHTGERPYKCTVCGKDFRRKMKFSLHMKLHTNERPYKCAVCGKDFVVMAYLTKHMSIHQSVYKHKCEVCGKAFNNSGNFATHQRIHMNEKFKCTVCEKDFSNKYSFGRHMKIHVDGYKHKCDMCGKGFISKSVLKDHENSHTGERPYKCTVCGKDFHSKINLSVHMQNHTSERPYECTVCGKNFVFMSYLTRHMRFHTNDYRHECDVCGKGFMTRSLLKDHEHSHTGERPYKCTVCGKEFALKGCLIQHMYTHQSKHKYKCEECGKAFHNGANLVRHKSIHTNEKFKCTICEKDYTTKYDFNRHMKIHVDGYEHKCDVCGKGFISKSLLKDHKHSHTGERPYKCTICGKDFHQKRNLSLHMHHHTSERPCKCTVCGKDFAIRCYLTRHMRKHTNDYEHKCDVCGKGFVSKSLLKDHENSHTGERPYKCTVCGKDLATMAYLYKHMRIHTDDKYECDVCGKGFATTTNLSRHRLIHESECKYKCEVCGKGMNDSSSFAKHKRLHTDEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-