Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.001 2.9 9.2 0.1 16 28 36 48 23 53 0.83

2 6 0.6 1.7e+03 0.3 0.4 18 29 67 78 55 89 0.77

3 6 2.6 7.3e+03 -1.7 0.2 8 27 86 104 80 105 0.69

4 6 2e-05 0.058 14.6 2.7 3 40 109 141 108 144 0.91

5 6 1.4e-05 0.041 15.1 2.6 13 39 145 168 141 175 0.84

6 6 0.048 1.4e+02 3.8 0.4 18 29 178 189 174 201 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.001	2.9	9.2	0.1	16	28	36	48	23	53	0.83
2	6	0.6	1.7e+03	0.3	0.4	18	29	67	78	55	89	0.77
3	6	2.6	7.3e+03	-1.7	0.2	8	27	86	104	80	105	0.69
4	6	2e-05	0.058	14.6	2.7	3	40	109	141	108	144	0.91
5	6	1.4e-05	0.041	15.1	2.6	13	39	145	168	141	175	0.84
6	6	0.048	1.4e+02	3.8	0.4	18	29	178	189	174	201	0.82

Coding Sequence: ATGATCATCCATCAGAATCTGACTCAATCAATGGCACGACGATTTGCTTCAGACAGACGAGCAAAGTCACACGCGGAAACTCATCTTCCGAGTGACGTTAAAAATATTCACCCCTGCCGGTATTGCAATAAAAAATTCAGCAAGGTAGCGAGTGTTGTTTTACAtataaaagcaatccacatcggTGAACGGCCATATATTTGCGAGGAATGTGGTAAAGATTTTACTACTAATGGTTCACTTAAAGAGCATCAGACAACACATAGCGACGAGCGACGCTTTATGTGCACCCAATGTTCAAAAGGATTCAAGAATTTGCCAGCATTAAAGAACCATATCGACACACATTCGGACACGAAATACGTTTGCACTCATTGTGGGTTAAAACTCAATACGAAACGAACCCTGCGGCGTCACATGGTAGTACACtcggatcagaaaaagttcaaatGCCAGTATTGCAGCAATGAGTTCAAGCGATCCAAAACTTTGAAGAATCACCTAATGCTTCACACCGGTCATCGACCATACAAATGCCCATTCTGTGAGAAAACCTTCGCCACCGGTCCGAACTGTCGTCAACACAAGAAGATCGCACACCCACTAGAACTACACGCACTCGAAGCATCGGGCGAACAAACCTGGGCTACCGATATCCCTAAGCTGGAGCAACTGCAACCGAAACATCTGGTAGTTAATAGGGTAATCGAATAA
Protein Sequence: MIIHQNLTQSMARRFASDRRAKSHAETHLPSDVKNIHPCRYCNKKFSKVASVVLHIKAIHIGERPYICEECGKDFTTNGSLKEHQTTHSDERRFMCTQCSKGFKNLPALKNHIDTHSDTKYVCTHCGLKLNTKRTLRRHMVVHSDQKKFKCQYCSNEFKRSKTLKNHLMLHTGHRPYKCPFCEKTFATGPNCRQHKKIAHPLELHALEASGEQTWATDIPKLEQLQPKHLVVNRVIE

Sequence clustering based on sequence similarity using MMseqs2