Mneu025949.1
Basic Information
- Insect
- Malacosoma neustria
- Gene Symbol
- -
- Assembly
- GCA_963693495.1
- Location
- OY856397.1:963472-968029[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 11 7.5 4.0 1 19 261 279 261 284 0.89 2 19 9.4e-06 0.0009 20.3 1.1 1 23 289 311 289 311 0.99 3 19 0.014 1.3 10.4 1.1 2 23 315 336 314 336 0.96 4 19 0.0095 0.91 10.9 1.1 1 23 343 366 343 366 0.93 5 19 0.0076 0.72 11.2 0.5 2 23 429 451 428 451 0.93 6 19 9e-05 0.0086 17.3 0.8 1 23 457 480 457 480 0.94 7 19 1.1 1.1e+02 4.4 1.6 3 19 485 500 484 507 0.76 8 19 0.00023 0.022 16.0 0.3 1 23 511 534 511 534 0.95 9 19 0.031 3 9.3 0.3 1 23 539 562 539 562 0.91 10 19 0.49 47 5.5 0.1 2 23 575 596 574 596 0.94 11 19 0.0015 0.15 13.4 3.1 1 23 602 624 602 624 0.98 12 19 7.5 7.1e+02 1.8 0.3 2 13 629 640 628 642 0.83 13 19 0.00058 0.055 14.7 4.1 1 23 659 681 659 681 0.97 14 19 0.0034 0.32 12.3 0.1 2 23 686 706 685 706 0.96 15 19 0.0014 0.14 13.5 0.3 2 23 721 743 720 743 0.95 16 19 0.00019 0.018 16.2 1.2 1 23 749 771 749 771 0.98 17 19 0.00092 0.088 14.1 5.6 2 23 778 799 777 799 0.96 18 19 0.0015 0.14 13.4 1.2 1 23 805 828 805 828 0.95 19 19 1.1 1.1e+02 4.4 1.5 2 23 834 856 833 856 0.94
Sequence Information
- Coding Sequence
- ATGGATGAAACAGATTTAAATGTAGGTGCCAGAAACGCTGAATGGTTAAGGACAAAATTAAACAAAGTTTGGAATTGTAAACGATTTTGTGGAATGTGTCTGGAAGAGAGTTATAATTTATGTCCTCTTGATATGGAATTCGTAATAAGCAAACAGAAGTCATCAAAATCATTTTTAGATTtgcttaattatattttcaaagaagatATAGAAAATTTAGTTGCCAGCTCTGGAATATGTGAAAATTGTACGGAGAAAGCTCTTCAAGCTTACATCTTCATGCATAATACAAGACAGCTCTCTAATATAATGAATGACTGTGTTAGTGACTTATATTCAAAAGTGTTAGATCTATCTCAACAGCTTGATGAAAAAGTTGATTGTGAAAATgcaaatataatgattattcTGGAATCTGAAACACATTTGTATGATCTTGTAGAAGATATGACTACTATGGAAGTAATGCCAATCAATTCCCCCAAGCTTgttaaaaaacatataataaaagaagATACAGCAACAAATGAACATgtgaaaattgatttaaatcaaAGCAATGAAATGAAtgttatagaaaatattaagGCAGAATTTTGTGATAATGATGAAACCACTTATAGTATTGATAATAGTGTTGATGAAGTTGTAAATTCTGCGGAAGGAAATGATGAAAATCTCTCAAGAATCAGTGTACAGCCAGAGATATATTTAAAAGGTGGAAATATTGTCATAAACCCACTAAACACTGATTCATCGTCATCtcttacaataaatatacataaatgtactcaatgtgaagaaatatttacaTCATATAGGAAATTAAAGGAGCATGACAAAAAGAAACACAAAAAGATCATATATCAGTGTGATATATGCAACAAAGTGTATAATACATTGCAATACTTAAATATACACTATAAAATGCATTTTAAGTCTGTCTGCAAGATATGTCATAAGGTGTTACCAAATACAGAGCTTATGCAACATTTGCGTACAACACATGCCACCTCCATACAAATACATCCATGCAAATTCTGTAATCTAGTTTACTATTCTAAAGAAGCATTAGAGACACATTTCAAAGCGATACACTTAAAAAATTGTATGGAAACTGAAGAAACTAAAAATCAATGTGCAATGTGTTTGAGGAATGTGCCACAGTGTGAAAAATATCATAAGTGCAAATATCTATGTCCTGAGTGCTTTGTCAACCCATGCATACATTTTCGTTACTTAACCAGTTATAGGGAACAAGTTTTGAACCACTCTGCAGAAATTAAGTGCATTGACTGCGATTATGTTACAAAAAGGAAGGAGTATTTAATAACTCATACAAACAGAGAACATCTGAATCATCATCCATTTGCATGTGATGACTGTGGAACGCAATTTTACACTAAAATGAGTTTACGTACACACATAGAACAATTCCACAACCTCAATATATGTGAATATTGCGATAAGGAGTTTAaacctacaaaaataaaagaccACAGAGAATTGTGTAAGCATTTGGTCAGGGATTATCCATGCCAGAATTGCGTTGCCACCTTTTCTACTCAAGAACAATTAAATAATCACGTAAATTTAAGACATAACAATATTGGTTATTCATGCAATAAGTGTAAAAGACAATTTTTGACTAAAATGGAATTGGAAGAACATGTAGCAGCGATACACAGAAGGATACAATGCAAAAAgcgaagaaaaaatattgaatgtaCCCTCtgcagtataaaatttaatagtgTTAAAGAAATGTTAGAACATGAAGAGGTACATGGTGAAGACGAAAAATATCCATGCAAATATTGTTCAAaagaattttattcattaaaaaagcTTTACATTCACAAGCAAAGACATTACGATAGGATTCAATGCAGTGGATGTAAGAAACGCGTGATCACATCATTCTATCCGCAACACGAAGCGCGTTGTCCCTACAGAAGTAGTTCAACATTATCACATATGTGCGAAACTTGTGGGAAGTCATTCCATTTGGAATCACTTCTACGTCTCCACCAAAAAAGCCACATGGACTCTGTACCATGTCCAGagtgtaataaaatgttaaaaccaTCTGGACTTCAAAAGCATTTAGAGAAACATGGCGATAAACCAAAACCTATATATGAACaaaaaggtttattaatttGCAACGTTTGTGGACATATAGCAAAACGAAAACGGGCTTTGGAGGCACATATAAACAGATATCATTTAAAAGTCAAGCCATTTGTTTGCTCTGTGTGTGATAAACAGTTTTGTGGGAAAGCAAGATTGAAAGGACATATGGCAACCCATTCCAATAGTAATGTATGTTATTGTTCAGTTTGTGGAAAGAAATTTGCTAACCGTGTGTGTTTGAAATTGCATTTTAGAATGCATACTGGGGAGTTGCCATATTCTTGTGACGTTTGTGGAGAAAAATTCCGTACATCAAGTATAATGAAGACGCATAGGATAAAGAAACATCTACAGAAAACGGTGCCTTGTCCAAAATGTGACAGCATGTTCTATATAGTACGAGATATGAGACACCACTTCAAGAAAACACATTGGAAGAATAAGGATAAACCGTTTGATGTAAAAGAAATATTACCTGAAGAATATTATCATTTGTTTGAAGATGGACGTTTAGCGAAAATTACAGATGAAGTTATTGAAACTGAAGTAATCAAGTCTGAACAGCATTTGTTTGAAGAAGCTGAGCAGTGA
- Protein Sequence
- MDETDLNVGARNAEWLRTKLNKVWNCKRFCGMCLEESYNLCPLDMEFVISKQKSSKSFLDLLNYIFKEDIENLVASSGICENCTEKALQAYIFMHNTRQLSNIMNDCVSDLYSKVLDLSQQLDEKVDCENANIMIILESETHLYDLVEDMTTMEVMPINSPKLVKKHIIKEDTATNEHVKIDLNQSNEMNVIENIKAEFCDNDETTYSIDNSVDEVVNSAEGNDENLSRISVQPEIYLKGGNIVINPLNTDSSSSLTINIHKCTQCEEIFTSYRKLKEHDKKKHKKIIYQCDICNKVYNTLQYLNIHYKMHFKSVCKICHKVLPNTELMQHLRTTHATSIQIHPCKFCNLVYYSKEALETHFKAIHLKNCMETEETKNQCAMCLRNVPQCEKYHKCKYLCPECFVNPCIHFRYLTSYREQVLNHSAEIKCIDCDYVTKRKEYLITHTNREHLNHHPFACDDCGTQFYTKMSLRTHIEQFHNLNICEYCDKEFKPTKIKDHRELCKHLVRDYPCQNCVATFSTQEQLNNHVNLRHNNIGYSCNKCKRQFLTKMELEEHVAAIHRRIQCKKRRKNIECTLCSIKFNSVKEMLEHEEVHGEDEKYPCKYCSKEFYSLKKLYIHKQRHYDRIQCSGCKKRVITSFYPQHEARCPYRSSSTLSHMCETCGKSFHLESLLRLHQKSHMDSVPCPECNKMLKPSGLQKHLEKHGDKPKPIYEQKGLLICNVCGHIAKRKRALEAHINRYHLKVKPFVCSVCDKQFCGKARLKGHMATHSNSNVCYCSVCGKKFANRVCLKLHFRMHTGELPYSCDVCGEKFRTSSIMKTHRIKKHLQKTVPCPKCDSMFYIVRDMRHHFKKTHWKNKDKPFDVKEILPEEYYHLFEDGRLAKITDEVIETEVIKSEQHLFEEAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -