Mneu023227.1
Basic Information
- Insect
- Malacosoma neustria
- Gene Symbol
- -
- Assembly
- GCA_963693495.1
- Location
- OY856392.1:9996774-10010577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.01 1 10.8 1.8 2 23 73 94 72 94 0.96 2 12 0.0018 0.17 13.2 0.4 3 23 102 123 100 123 0.95 3 12 0.17 17 6.9 0.2 2 23 131 153 130 153 0.88 4 12 0.00019 0.018 16.2 5.3 1 23 159 181 159 181 0.97 5 12 1.1e-06 0.00011 23.3 4.1 1 23 187 209 187 209 0.97 6 12 0.0011 0.1 13.9 3.3 1 21 215 235 215 236 0.95 7 12 0.053 5 8.6 0.6 3 19 259 275 258 280 0.91 8 12 7.1e-05 0.0068 17.6 0.3 2 23 563 584 562 584 0.96 9 12 4.6e-05 0.0044 18.2 5.7 1 23 591 613 591 614 0.95 10 12 0.0052 0.49 11.7 0.3 1 23 622 645 622 645 0.95 11 12 0.001 0.095 14.0 3.7 1 23 651 675 651 675 0.99 12 12 0.00014 0.013 16.7 0.7 1 22 681 702 681 702 0.95
Sequence Information
- Coding Sequence
- ATGGAAACGAATATACCATATTTTAGTCTGCCTTTTATCGACACAGAGGCGTCagaattagaattaaataagaataaatcaCAAGATGTATATAATGAACTGCATCCGATATTACCATCACATGGGTCATTGCTCGGGCCTGACGATGACTTGGCGCAGTTCTTATATGGCGACGAACCTTTAGAAGAACCTGACTTGAATGGGCCTACAACATTACATTGTGAGATTTGTAGAAAGCAATTCGACAATGCCAAGAAGTATTATGGACATCTTAGAGTACATTGTAAGGAGAATAAATGGATTTGTGataaatgtCCAAATGAGAAGTTCTCAACAAAGCAGCTGCTGATGAAGCATATCCTCACACATAAGCCATTGCATAGGGTGTGGAGATGTCCACAGTGCACCATGTCTTTTGAAGCCCTATGGAGGCTGCAACAGCATTTGTTTGCTAAGCATCTATAttacaaGCCACACAAGTGTCGTGAATGCGAGAAATCGTTTCATAAGAAATCTGATTTGGAGAAACATGAGAATATACATAAAGGTGTGAGAAGCCACTCGTGTACATTTTGCAAAATGGCATTCACAGACAAATCCAATCTGCGCCGTCATATGCTCACACATACCAACGAGAAGCCGTTCTGTTGCCCACATTGCAAGAGTAGATTTAAACAGataGCGTCGCTGAATCGTCACATACGCAATTGCAATTCTCGCCACCGCCAACCGGAGCCATCGGAAGCCGTCGACAAAACGGTCAGAAAAAACTATTGCAGAGTTTGTGGAATGGTGTTCCAGTACAAAAGTGCATTGCTTGAACACTGTGTCCGGGCTCACACAAATAACCCAACTTTGGTGccagaaaaagaaaaagagaaaGATGATAAAAGcaataatgttaatattgaTGCGAACCGCACAGTAGACAATATTGTGGATGATATCCTTTCAGCTGAAGACGATTACATGACAATGTCCACTCCTAGTGATATGTTAAATACATACAACCATCAGTACGATACAAATAATGACAATTTGCAATATGAACTGTTAAAAGATATGAATCAATTATATATGTTAGACGATGAActattattaaatgatattgATTTTGATAGTTTGCAAACTAATCATATATTTACAAGTGATATAGATTGTCCCGTTGAAAAGAATCCTGAGATGTTAGATCTAGATTGTGGACGAAGTATAGACCAGGACATCATGAATTCCCTCTACCAAGTTAAAAGTGAACATTTGCCAGAACTATTAACTACCCCCGATGTGCCCGTTGTAGAGAAACctaatgaatactttgaaagTCCCACAATATCAGTTAACGAATGCGCGACAATATTCGAAAGCGACGTGGATTTAGAAGCAAGCACGAGTTTGGCCGCGAATTTAAATCAGCTTATCGGAGAAAATACAGTGCAATATATATGCACTGAAGACGACGATAcgtttattattagtttaaatagaGAAATAGATGCAGAGAGATTGACTGATATGTTGAATATAGAAGTTGGACTGGTCGATACTAAAGCTCCAATGGATAGAGATGAGAAAGAAGAATTGCATACTAAAGACAAAGTTGAAGAAGTAACAATTATTCCTGTGAATGAAGTTGCAAAGCCAGAagagaaggaaaagaaagtcaGAATTAAGAAGTGTTTGTTACTTGTTTGTCCGGTTTGTGATAAACTGTTTACTAAGAAGTATAATTACGAGTCTCATGTTGGCACCCACGACCCGGCGCTGCGGCGGCACCGGTGCGACGTGTGCGGCGAGAGGTTCAGCTACCGGACGACGCTGAACAAGCACTCGCGCACGCACCACACCCCCACCGTGTACCCCGAGCACGCCTGCCAAGTGTGCGACAACACTTACAAGGCTGCTTGGCTGTTGAAAAATCACATGGAAAGAGTTCACGAAGGCTTGAAGCCGTACAAGTGCAATCACCAAGACTGCGGGAAGCTGTTCTACAAGAAGAACGACCTCGACAAACATGAGCGGAGCCACTCGGGCAGTCGGCCTTACGCGTGCGACGCGTGCAAGGCCCGCTTCTCGCAGTCGTCGCACCTCACGCGCCACGAGCGCACCTGCGCGCAGCGGACCCGCCTGTAA
- Protein Sequence
- METNIPYFSLPFIDTEASELELNKNKSQDVYNELHPILPSHGSLLGPDDDLAQFLYGDEPLEEPDLNGPTTLHCEICRKQFDNAKKYYGHLRVHCKENKWICDKCPNEKFSTKQLLMKHILTHKPLHRVWRCPQCTMSFEALWRLQQHLFAKHLYYKPHKCRECEKSFHKKSDLEKHENIHKGVRSHSCTFCKMAFTDKSNLRRHMLTHTNEKPFCCPHCKSRFKQIASLNRHIRNCNSRHRQPEPSEAVDKTVRKNYCRVCGMVFQYKSALLEHCVRAHTNNPTLVPEKEKEKDDKSNNVNIDANRTVDNIVDDILSAEDDYMTMSTPSDMLNTYNHQYDTNNDNLQYELLKDMNQLYMLDDELLLNDIDFDSLQTNHIFTSDIDCPVEKNPEMLDLDCGRSIDQDIMNSLYQVKSEHLPELLTTPDVPVVEKPNEYFESPTISVNECATIFESDVDLEASTSLAANLNQLIGENTVQYICTEDDDTFIISLNREIDAERLTDMLNIEVGLVDTKAPMDRDEKEELHTKDKVEEVTIIPVNEVAKPEEKEKKVRIKKCLLLVCPVCDKLFTKKYNYESHVGTHDPALRRHRCDVCGERFSYRTTLNKHSRTHHTPTVYPEHACQVCDNTYKAAWLLKNHMERVHEGLKPYKCNHQDCGKLFYKKNDLDKHERSHSGSRPYACDACKARFSQSSHLTRHERTCAQRTRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -