Mneu028170.1
Basic Information
- Insect
- Malacosoma neustria
- Gene Symbol
- -
- Assembly
- GCA_963693495.1
- Location
- OY856401.1:2763338-2766702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0034 0.32 12.3 0.8 1 23 39 62 39 62 0.90 2 15 0.00017 0.016 16.4 2.0 1 23 135 157 135 157 0.98 3 15 0.00045 0.043 15.1 0.1 1 23 161 183 161 183 0.97 4 15 0.13 13 7.3 1.1 2 23 189 211 188 211 0.88 5 15 0.0042 0.4 12.0 5.6 1 23 217 240 217 240 0.96 6 15 0.0025 0.24 12.7 2.6 1 23 247 270 247 270 0.96 7 15 0.00072 0.069 14.4 0.2 3 23 278 298 276 298 0.95 8 15 0.15 14 7.1 1.7 1 23 453 476 453 476 0.93 9 15 0.00066 0.063 14.5 0.1 1 23 546 568 546 568 0.98 10 15 0.00023 0.021 16.0 0.2 1 23 572 594 572 594 0.98 11 15 1.5e-05 0.0014 19.7 0.5 1 23 599 622 599 622 0.96 12 15 0.0044 0.42 12.0 0.4 2 23 629 651 629 651 0.94 13 15 0.07 6.7 8.2 5.3 1 23 658 681 658 681 0.96 14 15 1.9e-05 0.0018 19.4 2.1 2 23 688 709 687 709 0.96 15 15 0.00013 0.012 16.8 1.7 1 23 715 737 715 737 0.98
Sequence Information
- Coding Sequence
- ATGAAAtcagaaaaactaaaaaaaattaaagaagaactAAAAGCCAGGAGAAGGCAGACCGTAATTCTTCTAGAACATACCAGAATATGCCCGTTCCGATGGCAGAAAAATCTTTACATATGCTTCTACTGTGACCAGCAGTATACAGATCCTAGTTTTTTGAAAGAACATAATGTTAAAGAGCACCACAGTGTAAATTTAGAAGAAATAAAGTGCGCtctacataaaattaaaaatcatgaAGTAATTAAGGTTGAAATTTCAGAAATAATTTGCAAACTATGCAAtgaacatcataataatatagtagATGTAAAACGGCATCTATTAGATAAACATAATGTTAGTATAGATCCGAAAGTAGATCCGGGTGTTCTGCCGTTCAAACTATCAAATAAAGATTTCGAATGTGCGCTTTGTGATTGTAGATATAGTGATTATAAAAGTTTGAACCAGCACATGAACGTACACTTTCCGAATTATATTTGTGAGCAATGCGGCGTTGGATTCATTACTTCAGATAGATTGAGGTCCCATGCGATGTCGCACGAATCTGGCTACGTGCGTTGTGAGGCGTGTCACAAATCATTCCGCTCTACCAACGCGAGGAACGAACATTATGCATACGTCCATTTGAAAGTGAAACGGCACAGATGTCCTCACTGTTCAGAAAGCTTCAGAAACTATTTCCAGAGGAATAAACATATAACATCTGAGCATGGATTGAAGCTGAAAGAATTCAAATGCCATTTATGTCCAAAAGTGTTTACAGTTAGCGGGAAATTGGGATGTCATATTCGTTCGGTTCATTTGAAATTGAAGCGATACGGATGTGACGCGTGCGAATGGAAGTTCTATTCTAAGTCTGAGTTAAAGGAACATATGGTTCGACACAGTGGGGAGAGGAAGTACCAATGTGCAATATttaactgcaaactTATTCAAGCTAAATGTTGCACAATATCACGCTACACATTTGTCTATATACTGTTTATCAAAACTGACATTGAAGTGACAGTGACTTTATCTTTTCTAGGAGATGACGAAACAATAACAGAAGAAGGAGAACAAAGAAGAATAGTTCCGCTATTTCAAGTAGAATACGACAGGACTTTGTGTAAGCCTCTCGGGACTATTATAGATTTTAAGAAACTCAAGATTAATGCCAGGAATGATTTAAGTATAGGTGACATCAGTCCGTTAAGAAGCCCAACGCCTTTTCATGCACCAATTGAAGAAATATCAGAAGTGATACCAGAAATACCAGATGAAAAGAAATTACCAGATTTTAGACTGAATGCGCTGactatatttgaatatacaaCAGCATACCCTTTCATATAtgggaataataaatttaagtgCTTTATTTGTACTCAACATTATTTAGACCTCGTTCAACTGAAGCAACATATGGCAGATACACACCCATTCACAGCGTTGAAGAGACtggtgaataataaaaaagagaGCGTCCTAAAGATAGATATAAATGGAATGTATTGCAAGATATGTGGAGATCTGCCGAAGGATCTGGAAGAAATGAAAACGCATCTAAAAGATCATGATAAAGCGATAGATCTAAGTATACAAGACAATCTTATACCGTTTAAACTTGAATTAGTTGAGGATAGATATCGATGTGTTATTTGTGATCAAGGTTTTATAAAAGTAAGAAGCTTAGTAGTGCATATGAGtgttcattttaataattacagttgTGAAATTTGTGGATCGGGCTTCATGACTTTAAGGCTCTTAAAGAGGCATTTAGAAATTCATGAAAGCGGAACGTATACTTGTGATAGATGTAATAAGGTATTTAATACACCGAACAAGCTGACGTTGCACGTTCGTGGTGTGCATTTGAAGCAATGTCCACGCCGTTGTCCGATGTGCCCGGAGCGGTTCAATTCGAATTACAAACGAACGATTCACCTCCAAGAGGTTCACAATCAAGTGACGAGGGTGCACAAATGCGAGACATGTGGACGTGGGTTCAATCTACGCTACCATTTAGTATGCCATGTCCGCTCGGTGCATTTGCAAGAGCGGAATCAGCAGTGCGATGTATGCCATCAGAGGTACAGTAACAAGGAGTCCTTGAAGCGGCACATGGTGATTCATACTGGCGAGAAGAATCACAAATGCGATGTCTGTGGTATGGCCTTTTTGAGGAGGAAGAATTTGAAAGATCATTTACGGTTACATGAGACTGAATAG
- Protein Sequence
- MKSEKLKKIKEELKARRRQTVILLEHTRICPFRWQKNLYICFYCDQQYTDPSFLKEHNVKEHHSVNLEEIKCALHKIKNHEVIKVEISEIICKLCNEHHNNIVDVKRHLLDKHNVSIDPKVDPGVLPFKLSNKDFECALCDCRYSDYKSLNQHMNVHFPNYICEQCGVGFITSDRLRSHAMSHESGYVRCEACHKSFRSTNARNEHYAYVHLKVKRHRCPHCSESFRNYFQRNKHITSEHGLKLKEFKCHLCPKVFTVSGKLGCHIRSVHLKLKRYGCDACEWKFYSKSELKEHMVRHSGERKYQCAIFNCKLIQAKCCTISRYTFVYILFIKTDIEVTVTLSFLGDDETITEEGEQRRIVPLFQVEYDRTLCKPLGTIIDFKKLKINARNDLSIGDISPLRSPTPFHAPIEEISEVIPEIPDEKKLPDFRLNALTIFEYTTAYPFIYGNNKFKCFICTQHYLDLVQLKQHMADTHPFTALKRLVNNKKESVLKIDINGMYCKICGDLPKDLEEMKTHLKDHDKAIDLSIQDNLIPFKLELVEDRYRCVICDQGFIKVRSLVVHMSVHFNNYSCEICGSGFMTLRLLKRHLEIHESGTYTCDRCNKVFNTPNKLTLHVRGVHLKQCPRRCPMCPERFNSNYKRTIHLQEVHNQVTRVHKCETCGRGFNLRYHLVCHVRSVHLQERNQQCDVCHQRYSNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -