Mneu028222.1
Basic Information
- Insect
- Malacosoma neustria
- Gene Symbol
- -
- Assembly
- GCA_963693495.1
- Location
- OY856401.1:3204216-3218032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.22 21 6.6 1.1 1 23 235 258 235 258 0.92 2 24 0.0046 0.43 11.9 1.9 2 23 284 306 284 306 0.96 3 24 0.52 50 5.4 0.2 3 23 330 350 328 350 0.96 4 24 0.00015 0.014 16.6 0.2 1 23 354 376 354 376 0.97 5 24 0.075 7.1 8.1 1.3 2 23 410 432 409 432 0.93 6 24 0.051 4.9 8.6 2.4 1 23 439 462 439 462 0.96 7 24 0.0033 0.32 12.3 1.5 3 23 470 490 469 490 0.98 8 24 9.2 8.8e+02 1.5 0.4 1 11 496 506 496 510 0.81 9 24 0.052 4.9 8.6 3.1 1 23 539 561 539 561 0.95 10 24 0.041 3.9 8.9 0.1 2 23 590 612 589 612 0.91 11 24 0.0027 0.26 12.6 0.4 2 23 633 655 632 655 0.94 12 24 0.00081 0.077 14.3 2.5 2 23 661 683 660 683 0.95 13 24 0.0025 0.24 12.7 1.0 1 23 688 711 688 711 0.96 14 24 0.37 35 5.9 0.3 2 23 714 736 713 736 0.96 15 24 0.0015 0.15 13.4 2.0 2 22 743 763 742 763 0.95 16 24 0.026 2.5 9.5 0.7 1 23 819 842 819 842 0.92 17 24 0.11 11 7.5 0.0 3 23 871 892 869 892 0.94 18 24 0.077 7.4 8.0 0.3 2 23 915 938 914 938 0.94 19 24 0.00066 0.063 14.5 0.6 3 20 945 962 943 966 0.90 20 24 0.0067 0.64 11.4 0.7 1 23 971 994 971 994 0.97 21 24 0.0012 0.11 13.8 0.1 2 23 1000 1022 1000 1022 0.94 22 24 0.0015 0.14 13.4 5.3 1 23 1026 1049 1026 1049 0.97 23 24 0.00021 0.02 16.1 0.7 2 23 1056 1077 1055 1077 0.96 24 24 0.002 0.19 13.0 2.0 1 23 1083 1105 1083 1105 0.98
Sequence Information
- Coding Sequence
- atgGAGTTTGATGAGTTTTTTGTGAAGGAGAGCCCGGGCTTGTGCCGGTGTTGTCTTTCGGAAGGGTGTTACAAAGATCTTGGTTCAGAATACCCATGGATGAATGAAACTGAGGTTTATGCAGATATGCTGTTAGAATGCTTTGATATTAGTATTACTCAACACAATGAAGGTCCCAATGGTCCGAATCGTCTCATATGCGAAGTATGCATCACGAGGCTCAGAGATGCATGCAACTTTAAGAAGCAGGTCCTGGAATCCGAGAAGAAGTTCATCGACATGCTGGGTCGGGGGGAATTCAAGcctaaagTCCTGATATACCAGACTCAAATGAAGAAAGAACAGAGTGAAGAGTTGCCCGCGGAGGAGGTGGAATATCTCGATCATGAAATGGACTTTGATGATGGCGAGGTGATCAATTCAGCGGAGACCGAAGAACCGCCCCCCGTTGAAACGGTAACGGCTGAAACGTTAACCCTCAAACGTACGCTCAGGACGCTCAAGAAGGGGAAAGTCGGGAGACCTAAGAAACAGGCCGTCGCGGAAGATAAACCTAGGACGTCGAAAGCTGTCGCGAAAGGGAAGAAGCCAAATGACAAGAAGTCGCTATCGTCGACAATGAGAAACAGAATGATGAGGGAAAACGCTGTTGCGATCATCGAGAGCTCAACAGCGGTGCCGTTTAAATGGCAGCAGCAGGATTTCCTCTGCTTCAACTGTCACCTCCCCTTCAAAGATATAAAACCTTTAAAAGAGCATGCACGGGAGAATCATAAAAGTTCGAGCGTCAAAACAGCTGTGTCGTGTCTTAAAATGGACGATAAAGTTAAAATTGATGTCACTGATGCAACATGCAAACATTGTGATGAAGATTTTCGTAATCTGCAATCATTTGTAGAACATTTGAAGAATGTCCACGATATTAAAGTATCAGATAAATTTGGTTATGGTGTGGTACCGTACAGTTTTCCTGCAGATGAGGTTATATGTGGCGTATGCAACGAtggatttaaatatttcataaatgcAAACAAACATATGAATCAGCATTTTCGTGATTACGTTTGCGAGGAATGTGGCAAGGCGTTTATGAGCTACGATAGGTTAAGAGCTCATAATTTGATGCATGGAGCTAAATTTCGATGTAGATTCTGCACTGATACATTCGAGTCTGTAGTGAAAAGGAAAGTTCACGAAGCTAAAAACCACGATAGAAGTGGGCGTGTCCAGTGTTTACAATGCTCGGAGACGTTCAGTAATtacaacaaaagaaaaaaacatttaagtTTGGTGCACAAGGTTGATATTCCAATGTTCAATTGCACGGTTTGCGGTAAAGTGTATCCGTGTAGGAGCCGAATGGAAAGACATTTCAGGTCGGTGCACGTGAAGGAACGCAACGTTGCGTGTACGATGTGCGATTCGAAGTTCTTCTCTAGGGCGGACGTACGTAAGCACATGAAGAGGCACGTTGGTCTTACAGTGCATCAATGCAAAATATGTGTTAAAACGAGGAAATACCGCGGGGCGGAACCCTCTTCGATGCGTCGAAGGAGAAATTTCCAAATTATATTCAACAATACTACAATAATACCATTCAAATGGCGGGGGAAATATCTATGCTTTCATTGTAGTAGCGATTTCTCGCAGTACGCGGACTTAAAGAAGCACAATAAAATTCATGGTGGATGTTCTATAAATGATCATTGCCTGAAAGTGCTTAAAGGTGGTCAGAATATGGAAATCAAAATTGATATATCTGATATCAGTTGCGAAATTTGCAAGGAAACGTTTATAAATGTGAACGATGTGACATCACATCTAATAGACAAGCATAGTCTAAAGTACGATCCAAATGTAGATATGGCCATTGAAGAATATCGTCTATCGGATTTAACGTGTCTATACTGCGGAGAGAAATTTTCCTACTTCGGTTACCTCGTGTCGcatgttaataataatcatcCGAAAAATTGTCTAGTCTGTGACAAATGCTCCCAAAagttcaataaaaaaagggaTTTGTTTTCGCATATGAAGAATTATCACAGAGATGGTGGGTATCAGTGCGAATTGTGCCCACAGAGCTTTACTTCATTGAATATATTGCGAAAGCATACAAACAATCGACATTTGACTAGATGTGGTATATGCCAACTGAAGTTACCATCAGCAACGCTGAAACAGAAGCACATGAGCATGGAACATCCGGACGACGGTTCACAACAGTGCGATAATTGTGAGAAAACATTCCACACAAAGCAAGGTTTGAGAATGCATCTAAGGAAGTGTAAGGGAGATTTGTTCTATGCTATCAAAAAGGAAGAATACACATTGGATTTTGATCAGAACATTGAAGAGCCAAAGCGGCCGAGTGTGAAGAAAATCCGCGAGAATATTGTTACAGTTATCAACATGTCCACAGCGGTACCTTTcaatttttataagaataaattcAACTGCTTCTACTGTTCAAAAGATTTCCAAGACTCGGATTTAATGAGAGATCATACGGTAGTAGAACATCCCAAATGCGACGTTGATCAGAAATGCATACGAAAGTGCAGGGAATCAGTGGCATGCGTTAAAATTGATATATCCACCTTAGCTTGCAAGATTTGCTTTGAATCGTTGACTGAATTAGACGACTTAATCGATCATTTGATAATTCGTCATCAAGCAAATTATGATAAGTCTATAACAACCTGTTTACAGCCTTACAGATTGGTAAAGGATCATATGGTATGCCCGAATTGTCCGAACGAGGTCTTCCGTTTCTTTGGTACATTACTAAAACATATGAATAACAAACATACGGATAACAATATAATTTGCGTATATTGTGGCCAATCGTTCCGACGCGATCAGAACCTACGCGTTCATATTTGGAGGCATCATAGAGATGGTAGATTTAAATGTAACATATGCGGTGCCGAGTGTAGTATCCCTTCAAGGCTTTACATGCATATGGCCAAAACTCACGGTGTGAAGGCGGCTAAATGTCCGAAATGTCCCGAAGCATTCGCAACTCAGTATCTAAGACAGAAGCATTTGATAGAAGCTCACGATTCGGGGCACAAATGCACATATTGCGAGAAGTTGTTTACGAGAAATTCGTTTATGAAAGATCATGTGAGAAGGACGCATTTGAAAGAGAAGAATGTAGAGTGTACAATTTgtaatatgaaattttttaataatattctgttGAGGAGGCATATGGTCAAGCACAGCGGTGAGAAGAACTACCATTGCGATGTGTGCGGCGAGAGGTTTTATTGGAGAAAGAGTTTGAGAACGCACATGGCTAGACATAGTAAACACCAAAATTCTATACCACTGTAG
- Protein Sequence
- MEFDEFFVKESPGLCRCCLSEGCYKDLGSEYPWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFIDMLGRGEFKPKVLIYQTQMKKEQSEELPAEEVEYLDHEMDFDDGEVINSAETEEPPPVETVTAETLTLKRTLRTLKKGKVGRPKKQAVAEDKPRTSKAVAKGKKPNDKKSLSSTMRNRMMRENAVAIIESSTAVPFKWQQQDFLCFNCHLPFKDIKPLKEHARENHKSSSVKTAVSCLKMDDKVKIDVTDATCKHCDEDFRNLQSFVEHLKNVHDIKVSDKFGYGVVPYSFPADEVICGVCNDGFKYFINANKHMNQHFRDYVCEECGKAFMSYDRLRAHNLMHGAKFRCRFCTDTFESVVKRKVHEAKNHDRSGRVQCLQCSETFSNYNKRKKHLSLVHKVDIPMFNCTVCGKVYPCRSRMERHFRSVHVKERNVACTMCDSKFFSRADVRKHMKRHVGLTVHQCKICVKTRKYRGAEPSSMRRRRNFQIIFNNTTIIPFKWRGKYLCFHCSSDFSQYADLKKHNKIHGGCSINDHCLKVLKGGQNMEIKIDISDISCEICKETFINVNDVTSHLIDKHSLKYDPNVDMAIEEYRLSDLTCLYCGEKFSYFGYLVSHVNNNHPKNCLVCDKCSQKFNKKRDLFSHMKNYHRDGGYQCELCPQSFTSLNILRKHTNNRHLTRCGICQLKLPSATLKQKHMSMEHPDDGSQQCDNCEKTFHTKQGLRMHLRKCKGDLFYAIKKEEYTLDFDQNIEEPKRPSVKKIRENIVTVINMSTAVPFNFYKNKFNCFYCSKDFQDSDLMRDHTVVEHPKCDVDQKCIRKCRESVACVKIDISTLACKICFESLTELDDLIDHLIIRHQANYDKSITTCLQPYRLVKDHMVCPNCPNEVFRFFGTLLKHMNNKHTDNNIICVYCGQSFRRDQNLRVHIWRHHRDGRFKCNICGAECSIPSRLYMHMAKTHGVKAAKCPKCPEAFATQYLRQKHLIEAHDSGHKCTYCEKLFTRNSFMKDHVRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNYHCDVCGERFYWRKSLRTHMARHSKHQNSIPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -