Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.34 2.1e+02 2.8 0.3 16 43 59 83 55 84 0.73

2 7 0.0069 4.3 8.2 0.1 11 44 105 135 102 135 0.87

3 7 2.5e-06 0.0015 19.3 2.1 1 44 162 208 162 208 0.92

4 7 0.41 2.5e+02 2.6 1.8 16 28 240 252 236 264 0.86

5 7 0.038 23 5.9 3.9 18 43 269 291 256 292 0.90

6 7 0.023 14 6.6 0.8 6 26 286 306 284 319 0.84

7 7 0.011 6.8 7.6 1.3 18 40 326 345 321 348 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.34	2.1e+02	2.8	0.3	16	43	59	83	55	84	0.73
2	7	0.0069	4.3	8.2	0.1	11	44	105	135	102	135	0.87
3	7	2.5e-06	0.0015	19.3	2.1	1	44	162	208	162	208	0.92
4	7	0.41	2.5e+02	2.6	1.8	16	28	240	252	236	264	0.86
5	7	0.038	23	5.9	3.9	18	43	269	291	256	292	0.90
6	7	0.023	14	6.6	0.8	6	26	286	306	284	319	0.84
7	7	0.011	6.8	7.6	1.3	18	40	326	345	321	348	0.86

Coding Sequence: ATGAACACTAGGCAAGGATTTCTTAGACACGCCGCACAATGTAAAGTCGCCGCTGTTAAAACAGACGCTATCATACAAGATCGAGGAAAGGCAGAGAATATAGCTGACGTGAGAAGCGATATAGCGTCCATATTCAACATGTCCACCGCGTTaccttttaaatatttcatgaacAGATTCCGTTGTTTTTACTGCTCTAAAGATTTTCAAAACTGCGAGGATCTGAAACAGCATACTGTTGGAAATCATCCGTTTTGCGACATCAAATCCAAGTCGTTGAGATTGAAGAATAGAAGTGAAGGCGTGCGTATTAAAATTGATACCACATCTCTCGCGTGTAAGAtttgttttgaaaaatttgaaaatctCGATAATCTTATAGATCATTTGACAGGAGAACATAAAGCAAGTTTTGGTAATTCAATAAAGAAATACATAGAAGCGTTCAAATTGGTAATGGAGGAATTTCATTGTCCAGTTTGTTCAGAAGTTTATAGATATTTTGGTAAATTGCTCAACCACATGAGCGCAACTCAtacgaataataaaatattatgcatGTACTGTGGAAAATCATTCCGCACTGATCCAAATTTACGCGCACACGTGAATCGTTGGCACAAAGGCGATGGCAGATATAAATGTCTTGAATGCAAGATGGCTTTTGACACAATTGGTTCTTTACATAATCATTCAGCTAGGGTTCACGGTATTAAGACTGTCGAGTGTCAGTTGTGTCACGAGAAATTCACAACGAATTATGTTAAACATTGCCACATGATTAAAGTGCACGGCGTGGGTCATAAATGCACGTATTGCGGTAAATTGTTCCCTCGCAATTCTCACATGGTCGACCATGTGAGGAGGCAGCATTTAAATGAGAAGAATGTCGAATGTGCTCTATGCGGTGAGAGATTCTATGATGCGGCAAGGCTGAGAAGGCATGCAGTGAAGCATGGCGGCGAGAGGAATTACCATTGTGACGTTTGTGGAAAGACCTACTTGTGGAAGAAGAATCTGAGACGCCATATGGATAagcataataaaaatttaatttaa
Protein Sequence: MNTRQGFLRHAAQCKVAAVKTDAIIQDRGKAENIADVRSDIASIFNMSTALPFKYFMNRFRCFYCSKDFQNCEDLKQHTVGNHPFCDIKSKSLRLKNRSEGVRIKIDTTSLACKICFEKFENLDNLIDHLTGEHKASFGNSIKKYIEAFKLVMEEFHCPVCSEVYRYFGKLLNHMSATHTNNKILCMYCGKSFRTDPNLRAHVNRWHKGDGRYKCLECKMAFDTIGSLHNHSARVHGIKTVECQLCHEKFTTNYVKHCHMIKVHGVGHKCTYCGKLFPRNSHMVDHVRRQHLNEKNVECALCGERFYDAARLRRHAVKHGGERNYHCDVCGKTYLWKKNLRRHMDKHNKNLI

Sequence clustering based on sequence similarity using MMseqs2