Basic Information

Gene Symbol
nfxl1_1
Assembly
GCA_034769895.1
Location
CM068367.1:1263270742-1263300550[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.65 2.1e+05 -3.5 8.5 14 19 4 9 4 9 0.94
2 21 0.18 5.7e+04 -1.7 1.1 8 13 14 19 13 20 0.77
3 21 1 3.2e+05 -4.7 2.0 1 4 39 41 35 42 0.57
4 21 1.3e-09 0.00041 24.3 14.5 1 19 45 63 45 63 0.99
5 21 0.15 4.8e+04 -1.5 2.3 6 10 88 92 87 92 0.90
6 21 2.1e-10 6.6e-05 26.8 13.0 1 19 98 116 98 116 0.99
7 21 0.64 2.1e+05 -3.5 0.4 5 10 140 145 140 146 0.72
8 21 2.3e-07 0.074 17.1 10.8 1 18 151 168 151 169 0.97
9 21 0.076 2.5e+04 -0.5 0.6 1 10 178 187 178 187 0.77
10 21 4.5e-05 14 9.8 16.0 1 18 203 220 203 221 0.94
11 21 7.1e-11 2.3e-05 28.3 13.8 1 19 230 248 230 248 0.99
12 21 0.24 7.6e+04 -2.1 1.0 5 10 276 281 276 281 0.89
13 21 0.00025 80 7.4 6.6 10 19 297 306 295 306 0.92
14 21 0.00041 1.3e+02 6.7 8.0 1 12 315 325 315 325 0.96
15 21 0.53 1.7e+05 -3.2 1.5 14 18 354 358 354 360 0.59
16 21 0.51 1.6e+05 -3.2 0.8 1 6 385 389 384 391 0.45
17 21 2.5e-06 0.8 13.8 6.5 1 12 395 406 395 406 0.97
18 21 0.47 1.5e+05 -3.1 0.4 14 18 419 423 419 424 0.78
19 21 5.4e-05 17 9.5 15.4 1 19 435 452 435 452 0.94
20 21 5.9e-05 19 9.4 16.6 1 16 497 511 497 517 0.94
21 21 0.56 1.8e+05 -3.3 0.5 6 10 547 551 546 551 0.85

Sequence Information

Coding Sequence
ATGCAACGTCCATGTCCACCATGTCCCAAAATTGTAAAATCAACTTGTCACTGTGGGAAAAGCACAGCTCGACCACAGCGTTGCAGTAACAAACTGTGGTCATGCGGACAGAAGTGTGGCCACAAACTGTCATGTGGCCGACACAGCTGTGCTCAGGCTTGTCATGTTGGACCGTGCTCGCCTTGTCCACAGTACTCCACTCAGCCATGCATGTGCAGCAAGGAGACAATGATACGGGAATGTGCTCATCCTACGTGGCAGTGCCAACAGGTTTGTGGGAAGCTCCTTGACTGTGGTTCCCATAAATGTGAAGACATATGTCATAAAGGTGATTGTGGAGTGTGTCCACGTTCTCTGCCTCGTCACTGTCCCTGTGGGAAGACTGTATTTAGACTTCCATGCACAGAGGACATACCAACTTGTGGTGACACATGTGGGCGTGTTTTGGACTGTGGCATACACAAGTGTTCTCAGCGATGCCACAAAGATAAATGTGGAGCTTGTTTAGAAAGAACAGAGAAACAGTGTAGGTGTGGACTGCACAAGAAAGAAGTTCCTTGCCAGAAGGATTATCTCTGCGAGACAAAGTGTAAGCACATCAAAGATTGTAACCGTCATCCTTGCAACAGAAAGTGTTGTGATGGTGCATGTGGACCCTGTGAGAAACCGTGTGGACGTACTTTGACGTGTGGCAATCACAAGTGTACTTCTGTTTGCCATCGAGGCCAGTGTTATCCTTGTCCATTGACAGTACCAGTTAAATGCCGTTGTGGTGGCACGTTTATTACTGTACCATGTGGCCGGAAAAAAAAGACTCGTCCACCTCGTTGCTCAAAACCATGCCTGATCCCTCCAGACTGTCATCATCCAGAGAGAGAACGCCACCGTTGTCACTTTGGTTCCTGTCCACCATGTCGACAAGTATGTGGTATGAAATATGAATGCGGCCATTCTTGTCCAAAAACCTGTCACTCAGCTGTTCTTATTGATGTTAATGAAGGACTCAAGCCATCTGGTCCATGGGAGAAAATAACACCACAGTATGAACTGAGAGCATTTCCATGCGGCGACTGTCAGCATCCAGTTACTGTAGACTGTTTAGGTGGGCATGAGTCATCAGACGTCCCTTGTTATCATGCCAAAGAGTATCCATGCGGACGAACATGTCAACGTAGACTAGCTTGTGGTAATCATAAGTGTTCGTTGCCTTGCCACAAAGTGCTCGATGCTACTTCCCAGCAGGAGGCTGGTTCCAACTGTGAAACATGTAATGGGAGTTGTGAATTTCCTCGTCCTGAAGGTTGTAGTCACAGCTGTCCAAAACCATGCCATCGTGATGCATGCCCACCTTGTAAAGTTCTACTGAAGATACGTTGCCACTGTACTTTGAATCAGCTGTTTGTACACTGCCATGAATGGACTGCAGCATCTGACGAAGAAAGAATAAAACTTCAGATGTGTGGCAATCAGTGTCCCAAAAATTATGATTGTGGACACCGTTGCAACCATGACTGTCATCCAGGACCGTGTCCAGATGCTGACCTCTGCCATCGTAAAGTTAAAATATTTTGTTCATGTAAACGTATTAAAAAGGATTTTTCATGTAAAACTGTACGGTCAGGACAAGCAGTTTTGGAATGTGATGACGTATGTAAACAGAAGGTGGAATCAGAAATGAAGGTATGGTTTGCAGCCCAATAA
Protein Sequence
MQRPCPPCPKIVKSTCHCGKSTARPQRCSNKLWSCGQKCGHKLSCGRHSCAQACHVGPCSPCPQYSTQPCMCSKETMIRECAHPTWQCQQVCGKLLDCGSHKCEDICHKGDCGVCPRSLPRHCPCGKTVFRLPCTEDIPTCGDTCGRVLDCGIHKCSQRCHKDKCGACLERTEKQCRCGLHKKEVPCQKDYLCETKCKHIKDCNRHPCNRKCCDGACGPCEKPCGRTLTCGNHKCTSVCHRGQCYPCPLTVPVKCRCGGTFITVPCGRKKKTRPPRCSKPCLIPPDCHHPERERHRCHFGSCPPCRQVCGMKYECGHSCPKTCHSAVLIDVNEGLKPSGPWEKITPQYELRAFPCGDCQHPVTVDCLGGHESSDVPCYHAKEYPCGRTCQRRLACGNHKCSLPCHKVLDATSQQEAGSNCETCNGSCEFPRPEGCSHSCPKPCHRDACPPCKVLLKIRCHCTLNQLFVHCHEWTAASDEERIKLQMCGNQCPKNYDCGHRCNHDCHPGPCPDADLCHRKVKIFCSCKRIKKDFSCKTVRSGQAVLECDDVCKQKVESEMKVWFAAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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