Msep234726.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- SETMAR
- Assembly
- GCA_034769895.1
- Location
- CM068374.1:238577315-238629750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00066 0.88 14.1 1.9 3 23 147 167 145 167 0.95 2 13 0.00066 0.88 14.1 1.9 3 23 373 393 371 393 0.95 3 13 0.00066 0.88 14.1 1.9 3 23 599 619 597 619 0.95 4 13 3.9 5.2e+03 2.2 0.1 7 23 801 817 801 817 0.95 5 13 0.033 44 8.8 1.3 3 23 825 845 823 845 0.94 6 13 3.9 5.2e+03 2.2 0.1 7 23 1027 1043 1027 1043 0.95 7 13 0.051 68 8.2 0.5 7 23 1055 1071 1055 1071 0.94 8 13 0.00066 0.88 14.1 1.9 3 23 1277 1297 1275 1297 0.95 9 13 0.00066 0.88 14.1 1.9 3 23 1503 1523 1501 1523 0.95 10 13 3.9 5.2e+03 2.2 0.1 7 23 1705 1721 1705 1721 0.95 11 13 0.00066 0.88 14.1 1.9 3 23 1729 1749 1727 1749 0.95 12 13 3.9 5.2e+03 2.2 0.1 7 23 1931 1947 1931 1947 0.95 13 13 0.00066 0.88 14.1 1.9 3 23 1955 1975 1953 1975 0.95
Sequence Information
- Coding Sequence
- ATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAATGATAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAATGGGATGGACGCAGTTTTACGTCAAGAGGCATAATGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAATGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAATGGGATGGACGCAGTTTTACGTCAAGAGGCATAATGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAATGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAATGGGATGGACGCAGTTTTACGTCAAGAGGCATAATGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAATGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAATGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAACGGGATGGACGCAGTTTTACGTCAAGAGGCATACTGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaataAATTACAGATTAAAAATACATATGACTGCTCATCAAGACGCTAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAATGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAATGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAACGGGATGGACGCAGTTTTACGTCAAGAGGCATACTGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGGcgtaacaaaaacttcaaaacaaaTTACAGTTTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAAAGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAACGGGATGGACGCAGTTTTACGTCAAGAGGCATACTGCAAAGGCACTTAACAATTTATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAAAGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAACGGGATGGACGCAGTTTTACGTCAAGAGGCATACTGCAAAGGCACTTAACAATTTATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGACGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAAAGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAACGGGATGGACGCAGTTTTACGTCAAGAGGCATACTGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGttgAAACAATTAGCAGAAAGAATCGACAAAATCAAAAAGAATATGGAACTAAAATTCACACAACAGATAAACGAGCACAGAATACAAGAAGAACAGTCAATCAGTGAGAATAAGTACGAGAAACGAGAAGTATCGATAGAAGCGAGATCGGAAGCGATGGAAGTAGTGAATGAAGAAAGTGAAGTAGCAGATAAAGACTGTGATGTTAATGATAAGCCCTTAGAACGAGCAGTGAAGGAGGAAAATTATAAACAGTCTAAGAAACTCAAAAGGTCTCATGTGCCAAAAGAAGAACGCATTGTTTCTACACGGCATCTACGTCATAAAGGGTTTAGCAGTAAGTCAGCGGTATCAGCACAGTTAAAGACAAGTTATCTTAGAGAGAGACCATTGTCGTGTGAACGGGATGGACGCAGTTTTACGTCAAGAGGCATACTGCAAAGGCACTTAACAATTCATAGTGATGAAGTCCCATGGAATTGTTACAGgtgtaacaaaaacttcaaaacaaaTTACAGATTAAAAATACATATGAATGCTCATCAAGACGCAAAGAGCTGCATTCAGACACAAACCGTGTTCAACATCATGTGTAAAGGAGAATTAGGCGAACATGCGACTTTATTAAGAGACGGATATTTATCAGAAGACAAAGAAGAACTGAGAGATAATGAAAAGGACCAAAATGGTGTGCTGCTTGAAGAGTTTCTTGAACATAATGTCACAATTAATGCCACTGTGTACTGTAAAACTTTGAAGAAACTTAGACGTGCCATTCAGAACAAAAGATATGGAATGATGTCATCTGGAATTGTGTTTTTGCATGAAAACGCTCGCCTTTACACTGCTCGATCAACTGTTCACCTTATCGAGAAATTTGGAAGGGATATTTTTGACCATCCACCCTACAGCTCAGACCTCACACCAAGTAACTACCACCTGTTCCGTCACTTAAAGCAGTGGCTGCAATCTCAGCGCTTTGAAAACGATGACAAACTTATGATAGGAGTGACAATTTGGTCGAAGTCACTGGCAGCAGAAGTCACTTTTTAA
- Protein Sequence
- MELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLMISYLRERPLSCEWDGRSFTSRGIMQRHLTIHSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLMTSYLRERPLSCEWDGRSFTSRGIMQRHLTIHSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLMTSYLRERPLSCEWDGRSFTSRGIMQRHLTIHSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLMTSYLRERPLSCERDGRSFTSRGILQRHLTIHSDEVPWNCYRCNKNFKINYRLKIHMTAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPNEERIVSTRHLRHKGFSSKSAVSAQLMTSYLRERPLSCERDGRSFTSRGILQRHLTIHSDEVPWNCYRRNKNFKTNYSLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLKTSYLRERPLSCERDGRSFTSRGILQRHLTIYSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLKTSYLRERPLSCERDGRSFTSRGILQRHLTIYSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVTEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLKTSYLRERPLSCERDGRSFTSRGILQRHLTIHSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKLKQLAERIDKIKKNMELKFTQQINEHRIQEEQSISENKYEKREVSIEARSEAMEVVNEESEVADKDCDVNDKPLERAVKEENYKQSKKLKRSHVPKEERIVSTRHLRHKGFSSKSAVSAQLKTSYLRERPLSCERDGRSFTSRGILQRHLTIHSDEVPWNCYRCNKNFKTNYRLKIHMNAHQDAKSCIQTQTVFNIMCKGELGEHATLLRDGYLSEDKEELRDNEKDQNGVLLEEFLEHNVTINATVYCKTLKKLRRAIQNKRYGMMSSGIVFLHENARLYTARSTVHLIEKFGRDIFDHPPYSSDLTPSNYHLFRHLKQWLQSQRFENDDKLMIGVTIWSKSLAAEVTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -