Msep280487.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068376.1:237417628-237421566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 30 9.3 5.0 3 23 246 267 245 267 0.92 2 11 0.026 35 9.1 3.9 3 23 339 360 338 360 0.95 3 11 0.00029 0.38 15.2 0.2 2 23 578 600 577 600 0.96 4 11 0.0079 10 10.7 0.0 2 23 678 700 677 700 0.96 5 11 0.00055 0.73 14.4 3.7 3 23 733 754 732 754 0.93 6 11 0.041 54 8.5 4.4 3 23 806 827 805 827 0.97 7 11 0.013 17 10.0 1.9 2 23 841 863 840 863 0.94 8 11 0.0019 2.5 12.7 0.6 2 23 909 931 909 931 0.94 9 11 0.14 1.9e+02 6.8 0.6 1 23 1028 1050 1028 1050 0.98 10 11 0.0012 1.6 13.3 0.5 1 23 1065 1087 1065 1087 0.98 11 11 0.0054 7.1 11.3 0.6 1 23 1183 1206 1183 1206 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCAGCTCTAATACACATGTCATCATTAAGCCTTTGCACACAACTGGGCGAGAATATCATGATGTTAGATATGGAAACTGAGTTGGAGTCACTTTCACGGGATGGAGAAGGCACTGAAAGTAGACTGAAGCGGTCAAATCAAGAAGCGGATGATGATCAAGAGAGAAGTCAtgtgaaaaaaagaagaaaacaatCAAAACCTGTAAGAATAACTTCATCTGATCCAGTGAATGAGCATGTAGACTTCATGCAAGGAGTACAAGCACTAGAATACACGGGAGTTGTTAATCATTTTTTAACAAACACACTATTAGAAGAAAGTTTACAAAACTTTTCTTCCAGTGAGGATCTAGATGAATCAGATGTGTTTAAAACTACTGATGAACAAAATGAAATACAAAGTTCTGTAAAAGAAATTGAGGAAACTGCATTTCCATTAAACCTTTCAAGCATTAAACCAAGTACATCTTTTGGAGATTCAATTATGTCTTCACAGATGATCGATAATACAAGTAAATTCTCTAAACAACAAACAGCACTTGATGTTTCACTTTTTGCAtatcaatcatcatcatcatcacctgaaGGAACACCCAGAAAAATGACACCTCAAGATAAAATGTTTTTATCATCACCAACTCTGTTACTTCCATTTGTAAAACAGAATCAGATGCCAAACAGTAATCCACAGGGAGGATCACCCTTGCGCATATTTAATCCTGAagctttttgtgatctttgtaacAAAGAATTTTGCAACAAATATTTTCTAAAAACCCATAAAGCAAACAAACATGGAATTTATAATGACAATATTGGAGGACCAACGATACTGGATACACTTCCTTCATTGCCTTTTATGAATTATTTTCCAAATAACTGTGACACACCTAATCAAACACTGCCTCGTACTATTAATGTTGTAAAAAAACCGCAGGGTCCTCAGACAAGTAATCTGGTCCAACTTAAAACAAACATAAAcacaggaaatggaagtatgagaGCATTTTGTAATATATGTCAAAGAGagttttgtaataaatattttgttCGCAGGCATAAGGCAAAAATCCATGGAATTTTTGATCCAACCATGAAAGACGGATTTGGATTTGAAGGGCAAGAATTCAAAAATCCAGGTAACACAATACCTATTAACAGTACAGAAAAATCCGAGTCTTCAATCAATGATAATGAGATGCTCATAGGACATGCAAATTCTTTTTACTTTGGTGGAGAAAAAAGTGATATTCAGAATACTGAACTTAACACAGAAGGAGTAGTAATAAaacaagaaaatgaaaatgaaactgaGAATGAAGGTTGTATTGAAACTTCAATGATACCTGCATCAATTCCAGCATCAGTAAGTTCTTCGTTACAAATTTCTCAAAATGAAGATGGTATTAGGGATGGTAACCTTTCCCCTGACAGATTAAAACGAATTAGTTTTGTCAACACAGATGCATTCTGTGACATCTGTTGCAAAGAATATTGTAACAAATACTTCTTAAGAACACACAAACTAAAATGTCATGGTATAACGCCCATGGACTTGGATAAAAAGGAAGATAAAATAAATGGGAACAGCATCGGTCAGACTTATTACAGCATTCAAAGCCAAATTCAGACTGTTCCATTAAATCTAATTGTTGGTGACCAAGGAACAAATAGCTTGGAGACTGCAGCAAGAGCACAATATGACAATGAAAGTGAAGATCAGATTACCTGCAATGAATGTGGACGTTACTTTCAAAATCAAGTCTTATTAAAAATGCATGTATCAACAGCACACACAAACAAAGATTTTCAAAGCTATATCAATCACTCTGGAACTAAAGAAAATAAAGACTGTGAAAAAATGTTCAAATCAACTCGATCAGAAAAAACAATTTCTGAAACAGCTACTGAAAGACCAACACAAAACACCAATATAGAATCAAATAAGAACATGAGTTTTGATTCTATCCAGAAGTTGCATTCAATGATTGTGAAATTAAGCAGCTCAAATACGAGTGAAAATTCAGTGTGTGAAGTATGCAACAAGGACATTGGACAACCATCGTTACTAGAAACTCATATCCTCAAAGAACATTCAAATCTCTTAGAAGAAATTGGAAGTGTTTTTGATGAAGACAATTCAAATTCTCAGAGTTCATTTATAGTTCCTACATATGGTACAAAAAATGACTGCACCTACTGCCAAAAATCGTTTTCAAGTTCTGTGCTGTTGGAACACCATCTATCTGAATGTCATACTGAGCCTGATCAAATAAACATACCTTCTTCTCCTGCCGTATctaaatcactgaagaaagaaaataatgatAGCTTAAAATGTTCTACTGTCAATTTGTTAACACCTCAGTCAGAAAGACAAGGTGGTGTGCAAACTCCTACTAGTAGTTTCTGTGAAATATGTAAAAAGGAATTGTGTAATAAGTATTTTATGAAGACTCATATGCAACGAATGCATGGCATTTCAATAGAAAATGGAGCACACATAGGAGGAGTGGTGTGTGACATATGTAACAAAGAACTCTGCAGCAAATATTTCCTTCGTGTGCACAAACAGAATTCACATGGAATAGTAGATGAAGTGTTTTTACCACAGTTAACTGTTGAAGGTATAAGAAACCAGTCACCAAATGCTGACATCGCTTTGAAACCATCTGAACAAACGGACTTAAGCCACCGATATTTCAGCCACTTTACTGAAGTCTGTATGATATGTAGCAGAAGATTTAGAAGTACAAAATGGCTTAAAGCACACCTTTTAAATGATCATGGAGAAGAAGGAAAAGATAAATGGAAAGAATTTCAAATACAATTGGACATAACCTCCAAAATTGAAAAGCCTTCAAAAGAGGGAATTAAAAAACCAGATCAGTCTAGTATGACATCATTTTGTGGTTCAGTTTACAAACCAACTACCAGTTCTAACATAAATGTATCACTGAGTGAAGCAAATACAGTGAGATATGATACATTAACAAGACCTTCGTCCGTAGAAAAATTACATCAAACAAACATGTTTGCAATGTTACTCAGTGAAAAAGATCAAACAGCAAAGCAGTATCAGTGTTCCTATTGTTCCTTTTCAACACCTATTCTAGCATTCCTTTTTGTTCATGAAAGATCACATATGAGAAATTCTGCCATTTGCAGAACAGATCAAGAAAGTACTTATAAATGCAGTATTTGTTTACAAATATATGATACAAAAGAGTCATTGGATAAGCATTTACTTTCACACAAAAAAACTGGTGTCATGCCATATACAACAGAATCTTTCAGTTCAACTCAAGATTTTGTTAAACATTTCCAAACAGTATCAAAAAATGAATATGACTTTTTAAACGGAAAGGAAGTATTAACAGAAGGTAAAGCTGAAAACATCATACAAAATGAAAATGAGGTGGCACAGATATCAGAAGAAAATAAACTTAAAAAAGACAAAAATTCAACAATAAGAGAAACACATGATGAAAATTATCCTAATGTGTTAGCAGTTACTTCTAAAACATCTGATGAAAACAATTACAAATGTACAAAATGTGACTTCACTTATACCGACATAAATGTATATAATGATCATATCATTACTGAACACAAAAACAATGATGAAATTTTTTTATCACAAGGACAAAGGATGAATTCAGAGCTGGTTGGTACACTAGAAAAAGTTAAAAACTGTTTGTCTTTAATTGCTAGTAAAGCTGAAATACCAGCATTGTATGCAGTTCCTCAGACGCAGTGTCAGTATACCATGCAACCATTTGTTTTAGAAGACTCAAGTGATCACAAAGAAACCAGTAGTACTTCACTTGAATCAAAACTGGGTAAATCGTTCCTATCTTCACTTGTATTTTTACCTGTCAGGGAAATGTTAAAAAAGCCTGTGACAGCATCGTTCAAACTGACACCTACATGA
- Protein Sequence
- MASALIHMSSLSLCTQLGENIMMLDMETELESLSRDGEGTESRLKRSNQEADDDQERSHVKKRRKQSKPVRITSSDPVNEHVDFMQGVQALEYTGVVNHFLTNTLLEESLQNFSSSEDLDESDVFKTTDEQNEIQSSVKEIEETAFPLNLSSIKPSTSFGDSIMSSQMIDNTSKFSKQQTALDVSLFAYQSSSSSPEGTPRKMTPQDKMFLSSPTLLLPFVKQNQMPNSNPQGGSPLRIFNPEAFCDLCNKEFCNKYFLKTHKANKHGIYNDNIGGPTILDTLPSLPFMNYFPNNCDTPNQTLPRTINVVKKPQGPQTSNLVQLKTNINTGNGSMRAFCNICQREFCNKYFVRRHKAKIHGIFDPTMKDGFGFEGQEFKNPGNTIPINSTEKSESSINDNEMLIGHANSFYFGGEKSDIQNTELNTEGVVIKQENENETENEGCIETSMIPASIPASVSSSLQISQNEDGIRDGNLSPDRLKRISFVNTDAFCDICCKEYCNKYFLRTHKLKCHGITPMDLDKKEDKINGNSIGQTYYSIQSQIQTVPLNLIVGDQGTNSLETAARAQYDNESEDQITCNECGRYFQNQVLLKMHVSTAHTNKDFQSYINHSGTKENKDCEKMFKSTRSEKTISETATERPTQNTNIESNKNMSFDSIQKLHSMIVKLSSSNTSENSVCEVCNKDIGQPSLLETHILKEHSNLLEEIGSVFDEDNSNSQSSFIVPTYGTKNDCTYCQKSFSSSVLLEHHLSECHTEPDQINIPSSPAVSKSLKKENNDSLKCSTVNLLTPQSERQGGVQTPTSSFCEICKKELCNKYFMKTHMQRMHGISIENGAHIGGVVCDICNKELCSKYFLRVHKQNSHGIVDEVFLPQLTVEGIRNQSPNADIALKPSEQTDLSHRYFSHFTEVCMICSRRFRSTKWLKAHLLNDHGEEGKDKWKEFQIQLDITSKIEKPSKEGIKKPDQSSMTSFCGSVYKPTTSSNINVSLSEANTVRYDTLTRPSSVEKLHQTNMFAMLLSEKDQTAKQYQCSYCSFSTPILAFLFVHERSHMRNSAICRTDQESTYKCSICLQIYDTKESLDKHLLSHKKTGVMPYTTESFSSTQDFVKHFQTVSKNEYDFLNGKEVLTEGKAENIIQNENEVAQISEENKLKKDKNSTIRETHDENYPNVLAVTSKTSDENNYKCTKCDFTYTDINVYNDHIITEHKNNDEIFLSQGQRMNSELVGTLEKVKNCLSLIASKAEIPALYAVPQTQCQYTMQPFVLEDSSDHKETSSTSLESKLGKSFLSSLVFLPVREMLKKPVTASFKLTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -