Msep031220.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Magicicada septendecula
Gene Symbol
-
Assembly
GCA_034769895.1
Location
CM068367.1:692468639-692480307[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00014 0.19 16.2 0.5 2 23 50 71 49 71 0.96
2 16 0.48 6.4e+02 5.1 0.3 2 21 77 96 76 97 0.91
3 16 0.093 1.2e+02 7.4 0.8 2 21 242 261 242 262 0.94
4 16 0.41 5.5e+02 5.3 0.6 2 21 269 288 268 289 0.91
5 16 0.0019 2.5 12.7 3.3 2 23 304 325 303 325 0.93
6 16 0.0054 7.1 11.3 2.6 3 23 330 351 329 351 0.90
7 16 0.0027 3.5 12.2 5.9 1 23 360 383 360 383 0.94
8 16 0.0018 2.4 12.8 0.5 3 23 390 410 389 410 0.97
9 16 0.0069 9.1 10.9 0.6 2 23 416 437 415 437 0.96
10 16 9.4 1.2e+04 1.0 0.6 1 23 440 463 440 463 0.91
11 16 2.5e-05 0.033 18.6 1.8 1 20 472 491 472 492 0.95
12 16 0.0018 2.5 12.7 2.5 1 22 500 521 500 524 0.89
13 16 0.00025 0.33 15.5 1.9 3 23 537 558 535 558 0.95
14 16 0.0034 4.5 11.9 0.9 1 19 593 611 593 611 0.97
15 16 7.5e-07 0.001 23.4 0.7 1 23 622 644 622 644 0.99
16 16 0.79 1.1e+03 4.4 3.7 5 23 653 672 651 672 0.94

Sequence Information

Coding Sequence
ATGTTAACAACGGGGTTTAATGTTTCAGAGAGTCTGCAGACAAATGACATCTCTGAATTGGCCAAAACtaaagaattaagtctacaatatAATGAAAATTGTTTGAATGTTGAAGAATCAGAAGGGAAAGGAAAAAGTATCAATAACAAGTGTCCTAAGTGTGATAAACAATTTGAAAATAGTGTTTACCTTCTGGAACATTTAACACTTCACCAAGGAAGTCCACTGTCTTGTAAAAAGTGCCAGAATACCTTTGGAAATAATATTGCATATATTTACCACACTAAACTGAATCTATGCCAAGAAATAAATAAATCTGATAAAAGAAGAAAGACGTGCCAAGGGTTTAGGAAAACATCTCCTTGTAGTGATTTCACCAAATATGTAGATGATCACAGCTATACTGATTGTAAAACATGCAGTGAATACTGTACTGACAGGAAACATCTGTTTCATTCTTTGGAAGTACACAACATTCAGTTGGAAGACAATATTTATAAtgCTACAGAAGATAAAGCAATAGATGAATGCCTTGACTCTCTGAGTGTGGAACCATGTCATGTTCGTGCAAATGAGAATGTGTCAAACAGTTTTAGTGGGAACAGTGGAACTTTGCAAGAAATCAAGGTGTTAAAATCACCAAGAAATGAAGAAATATGTATAAAATCTAATGAAAAGTACTTGGGAGAAGAAGAATTAAAGACAAGTGAATATATAACTGCTAAATGTCCTAGATGTGAGAAACAGTTTGAAAGCTGTGTGTTTCTTTTGGAACATTTAATGTTGTATACTGGAAGTCCACTGTCCTGTAGAAAATGTCAGAATTCTTTCACAAATGGCACTGCATTTAACTACCATGTTAAAATGAATCTTTGTCAAGAAATAAAGAAACCTAATGAAAGAAAAAAGACTTGCCAATTGTGCAATAAAACTTTCCATAGTGTTAGCAACTTCAGGAAGCATGTAGATGGTCACAAACGAAATGACTGTAAAATATGTAAAGCACATTTCACCAACAGAAAACATTTGGAAGTCCATTCTCTAGAGGTCCATAACACTAAAATAGAAAAGAATCATTTCAGatGTCATTTGTGTACCAAAGCATTTATACATCGTCGTTCACTAGTTCATCACTACAGTTTGGCCCACAGTAATGATGGTAAAGCATGTTCTAAGTGTTCAAAGTTTTTTGTTGATGAAAGTGAATATAAATTACATGAAGATACTCACAGTTTAAAAGAATGGGTATGTGAAAGGTGCAATGATAGATTCTCAAGGAGGCAGCAGTATCTTGTTCACATACAGAGTCATGACAGATATCACTGCATAACATGTAATGAAAGTTATgctgcaaaaaataaaataatagagcATGAACGCCGAGGACATTCTGTAAAGGGTTTAGAACCACAGCATCAGTGTACAGAATGTGGAGAAACGTTTCACAGCAAGTCCAACCTGAACTCTCACACTGGATGCCATACTGCGGAAAAGAAATATACTTGTGTTCCATGCAAGAAAGTTTTCAAGAAATACTCACATTATACTCGTCACCAGTTGTCAGCAGCCCATATTAATGACCAGCCACCTGTTGATGAGCTGTTAGCTTGCTCTGTGTGCAAAAAAACATTCAGGTATAGGCATGAGTTGGTTTCACATGAAAAGAGAGTACATAAACCTGAACACAAAGCACAACAGTGTGAGTTTTGCAGTTATAAATCAACATGTGATTCGAACATGAAAAGACATGTTGCTCTCCATACACAGAAACAACAGTTTATATGTGAAAAATGTGGATCATCATTTTATACAAAGAATTCACTCAAAGAACATGATAAATGTGTTCATTCTGATGAACGTAACTATAGCTGTGATAAGTGTGGCCGTGCTTTTAAACTAATCAGCAGTCTTAATAGACATATGTTAACACATTCTGATGAAAGGCCTCAAGTATGCCATTGCGGTAATGCATATAAATTTGCATGTAATCTAAGACATCATCAGCTGTTAGTTCATGGGAAAGTAGATTCAGTGAAGAGAATTAAAAGACTGTATAAGGATGAAACTCTTCCTGCTAAAACTCAGAACAAagttaagaaaaaagttaaaataaaacaaactGAAGATTCATCTGACCCTATTATTTCAGTAATAAACCCTCAAGTTGTTAATCTACCTCCATCACCTCTATCAATATCACAATCATCAACTCCAGTATCACAAAATACTTTAGTTCTTATGACTGATAGACATGAATCACATTTATTACAGGTACCATACCAGAATGTCAGTTTTTCTTCGGACTCGAAATCTCACATTCTGTATACACCAACTTTAGACATGACAAACTTGCAAGTTGCAGAATCAATGTTACACTTAGGAAACAAAACACTTAAAAGCGATCAAAATGTTTTACTTAATCCGTCAACccacaataatatttttaatagaCCCATTACAGACTCTGACAATAGCTATATCCATCCTGAAGAAATAATTCATCCTTCAGTTCAGCCATCAATTATATCAAGCTTAGAAGAATCACTGCATGGTAATGTTGGTCAGTCTGACCCTAAACAAACTTTAATGACAGCTTTACCAGACTACATACCACACAGTTTTACTTTCCTTAAtgtttaa
Protein Sequence
MLTTGFNVSESLQTNDISELAKTKELSLQYNENCLNVEESEGKGKSINNKCPKCDKQFENSVYLLEHLTLHQGSPLSCKKCQNTFGNNIAYIYHTKLNLCQEINKSDKRRKTCQGFRKTSPCSDFTKYVDDHSYTDCKTCSEYCTDRKHLFHSLEVHNIQLEDNIYNATEDKAIDECLDSLSVEPCHVRANENVSNSFSGNSGTLQEIKVLKSPRNEEICIKSNEKYLGEEELKTSEYITAKCPRCEKQFESCVFLLEHLMLYTGSPLSCRKCQNSFTNGTAFNYHVKMNLCQEIKKPNERKKTCQLCNKTFHSVSNFRKHVDGHKRNDCKICKAHFTNRKHLEVHSLEVHNTKIEKNHFRCHLCTKAFIHRRSLVHHYSLAHSNDGKACSKCSKFFVDESEYKLHEDTHSLKEWVCERCNDRFSRRQQYLVHIQSHDRYHCITCNESYAAKNKIIEHERRGHSVKGLEPQHQCTECGETFHSKSNLNSHTGCHTAEKKYTCVPCKKVFKKYSHYTRHQLSAAHINDQPPVDELLACSVCKKTFRYRHELVSHEKRVHKPEHKAQQCEFCSYKSTCDSNMKRHVALHTQKQQFICEKCGSSFYTKNSLKEHDKCVHSDERNYSCDKCGRAFKLISSLNRHMLTHSDERPQVCHCGNAYKFACNLRHHQLLVHGKVDSVKRIKRLYKDETLPAKTQNKVKKKVKIKQTEDSSDPIISVINPQVVNLPPSPLSISQSSTPVSQNTLVLMTDRHESHLLQVPYQNVSFSSDSKSHILYTPTLDMTNLQVAESMLHLGNKTLKSDQNVLLNPSTHNNIFNRPITDSDNSYIHPEEIIHPSVQPSIISSLEESLHGNVGQSDPKQTLMTALPDYIPHSFTFLNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-