Msep148599.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068370.1:334784829-334788265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6e-05 0.021 19.2 1.1 2 23 135 156 134 156 0.97 2 11 8.3e-06 0.011 20.1 1.9 2 23 160 182 159 182 0.96 3 11 0.015 20 9.8 0.6 2 23 190 211 189 211 0.94 4 11 0.076 1e+02 7.6 2.3 1 23 259 282 259 282 0.84 5 11 0.45 6e+02 5.2 2.5 2 23 286 307 285 307 0.97 6 11 0.011 15 10.3 0.1 2 21 313 332 312 333 0.85 7 11 0.0056 7.4 11.2 0.1 3 23 344 364 342 364 0.93 8 11 5.3e-05 0.07 17.6 1.3 2 23 372 394 371 394 0.96 9 11 1e-06 0.0014 23.0 1.1 3 23 402 422 400 422 0.96 10 11 2e-05 0.027 18.9 1.0 3 23 430 450 428 450 0.96 11 11 0.06 80 7.9 6.5 1 20 456 475 456 477 0.93
Sequence Information
- Coding Sequence
- atgagtgacttaaattacgagcaacgttgtgcaatcaagttttgtgttaaacttgagcacaatgctactgaaacttttacaaaattgacaaaggtGTATGGAAATGAAGCTTTGTCAAGggcacagGACGAAGCTGGTGTAACACTGAACGCAGGTGGCGAGGGAAACATCATTAACATTCAGCATCTTTGTGGGTCGGTTGTTGCAATACATAATCAAGATGGTTTAAATAAAACTGGTTGTGATAGTACTAGTCAGGCTGGAGCAAATAAAGTGATAGAAAATATTGGAGACAAATCATCCAGTAAAGATAGTGAAGCATATAACTGTGAATCGTGTTACGCAAGATTCAAAATCAAGCATTCATTAAGTTTCCATAATTTAGTGGTCCAGACAGAACTAAAATGTGAAAAATGTGATAAGATGTTTTCAAGTGGAACAGAAATGGAGAACCACTATAGGACGCATGATTCTTGGACATGCACTGGATGTGGAAAACTATTTAAAACCAGTGATGCCCTACAGTATCACATAAAAAAATGTCATGCAGAAAATGAAGAACGTTGTGTATGTAAAACATGTGGTGAGAGTTTTTTGGATATCACCACATTAAAGGCACATGAAGCAAGTCATGTTAAAGGTAATGAATGCATGGGAAGTATGGTAAAAACATGTCAGGAAAAGGAAGCAACCAGTTGCAATGATAACAGTACACAGGAGGAAACGAGTAGCGTGAAAAAGAGCAAGGACAAACCTTGTAAAGACAGTGAGGGATTTAAGTGTGAAATATGTCATGCCACCTTTAAGGTGAGGCGCTTGTATAACTTCCATAAGTTAGTGCTTCATACAGACAATAAGTGTAGACAATGTGGTCATATATTTTTGAGTAAAGCAGATAAGGAGAACCACCGTAAAATTCATATAAATTCTAAACTGACGTGCAGTGAATGTGGAAAAGTATACAAAAGCATTGGGGGTTTGCAGTTTCATGTGAAAACGTGTAATAAAAAAAACAAGTGTTCATGGGCATGTGAAATGTGTGGTAAACGTTTTTTGAACATGGCTGCATTGAAGAAACATGAAGAGCTTCATGCTGACGGCGAACAACACTTGACATGCAAAGTGTGTGACAAGACGTATCCCCACATCCGTGCACTGAAGGTACACAGAAGAAGGGTACACTTAGTTTCTCAACGTGTTCATTGTAATATATGTAATAAAGGTTTTAAACAACAGGATGCTTTAGAAAAGCATATGGAATATCATGCTGGAAAAAAGTCATATGGTTGTCGTTTTTGTGGGTGTGTGTTTGCACAGAAGGATAATTTGAAGGACCATATGGATGTTCATGCAGGACTGCTACCATATTGTTGTCAAAACTGTGAACACCGCTTTAAGTCAAAACAGACATTTAATAAACATGTTTCAAAGTGCTCAAAAAAACAAACTGCCAAAGTTCCAGAGAATACAAAAACCTCGGACACTTCTGTAGTCACGATTACTATTGATGATTAA
- Protein Sequence
- MSDLNYEQRCAIKFCVKLEHNATETFTKLTKVYGNEALSRAQDEAGVTLNAGGEGNIINIQHLCGSVVAIHNQDGLNKTGCDSTSQAGANKVIENIGDKSSSKDSEAYNCESCYARFKIKHSLSFHNLVVQTELKCEKCDKMFSSGTEMENHYRTHDSWTCTGCGKLFKTSDALQYHIKKCHAENEERCVCKTCGESFLDITTLKAHEASHVKGNECMGSMVKTCQEKEATSCNDNSTQEETSSVKKSKDKPCKDSEGFKCEICHATFKVRRLYNFHKLVLHTDNKCRQCGHIFLSKADKENHRKIHINSKLTCSECGKVYKSIGGLQFHVKTCNKKNKCSWACEMCGKRFLNMAALKKHEELHADGEQHLTCKVCDKTYPHIRALKVHRRRVHLVSQRVHCNICNKGFKQQDALEKHMEYHAGKKSYGCRFCGCVFAQKDNLKDHMDVHAGLLPYCCQNCEHRFKSKQTFNKHVSKCSKKQTAKVPENTKTSDTSVVTITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -