Msep052857.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:1137142357-1137149583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0028 3.7 12.2 0.7 1 23 24 47 24 47 0.95 2 27 0.0002 0.27 15.7 1.7 2 23 54 76 53 76 0.97 3 27 9e-05 0.12 16.8 0.5 2 23 163 185 162 185 0.94 4 27 0.025 33 9.2 0.8 1 23 225 248 225 248 0.95 5 27 0.27 3.6e+02 5.9 1.0 3 23 256 277 254 277 0.93 6 27 1.8 2.3e+03 3.3 1.3 1 23 289 311 289 311 0.97 7 27 0.00023 0.31 15.6 0.9 2 23 352 374 351 374 0.97 8 27 9.6 1.3e+04 1.0 3.8 1 23 393 416 393 416 0.92 9 27 0.0044 5.9 11.5 0.2 2 23 423 446 422 447 0.91 10 27 0.031 41 8.9 0.1 2 23 456 478 456 478 0.95 11 27 0.013 18 10.0 0.1 1 23 484 507 484 507 0.94 12 27 0.00026 0.35 15.4 3.7 1 23 515 537 515 537 0.97 13 27 6.3 8.3e+03 1.6 0.1 2 23 569 592 568 592 0.88 14 27 0.0011 1.4 13.4 0.4 2 23 596 618 595 618 0.95 15 27 0.02 26 9.5 2.8 2 23 625 646 624 647 0.94 16 27 0.71 9.4e+02 4.6 5.3 1 19 673 691 673 694 0.81 17 27 4.1e-05 0.055 17.9 0.2 1 23 715 738 715 738 0.98 18 27 1.9 2.6e+03 3.2 0.1 1 23 741 765 741 765 0.89 19 27 0.039 52 8.5 1.2 2 23 803 825 803 825 0.97 20 27 0.33 4.4e+02 5.6 0.3 1 23 831 854 831 854 0.95 21 27 0.0088 12 10.6 1.1 2 23 863 884 863 884 0.97 22 27 0.0093 12 10.5 0.2 1 23 889 911 889 911 0.97 23 27 0.0023 3 12.4 2.9 1 23 961 984 961 984 0.94 24 27 0.023 30 9.3 0.2 2 23 1089 1111 1088 1111 0.95 25 27 6.2 8.3e+03 1.6 1.9 2 23 1118 1140 1118 1140 0.93 26 27 0.28 3.7e+02 5.9 1.0 1 20 1185 1204 1185 1208 0.83 27 27 5.4e-05 0.072 17.5 0.4 1 23 1222 1244 1222 1244 0.95
Sequence Information
- Coding Sequence
- atgatcgagagtgcatacaaaaattatgatttttgcAGTTTGTCCGAATTTTCCGACTTTCCTTTgcCATTCCAGTGTGAACTCTGTAACAAGTCCTATGCATTAGCAAAACACTTGTGGGGGCACGTAAGCTCCACACATAGGGGTCATCCTAGGGTTACTTGTAATTTCTGTTCACGTATATTCTCCACTGCTTTCAATCTCCAAGAACATAAGAAAACAAGACATCCAGTGGAGACAGAAGAAGAATCAAAGcagGTTGAAAATAATTCCGTTAACAGTGAAGATTGTGTTGAAATTGAAAATGAAAGTCAGTGCTCAATAGAAACACGTAAGGTACCAACAAGCGAAGAAGTAAGTGGTAGTCGTCGCAAAAATTCCAAACCAAGAAAAATTGAACGAGATCAAAATATTGAAGAtgaaaattatgattattattcacaCATGAGTGCCGATGGAAGGTGGGAGGATGATGAACAACCATCATCTTGCTTTATATGTAATAGGGTATTTACAAATCAGAATGCATTGAAAGCCCATTTTATGTCAGTACATGATATTGATCAGGGTGATTTAGATTTTGGTGATTCCATGCCGAACAAACATCGTATAAAGAAAGAAAACGTAGATGAAAATGATGTGGCCGAGAACATGTTGGAGGctgaaacagttttttgttgtgaAGTCTGTATCCGTGAGTTTAATGACAGAGCTAGCTTATGGTTGCACATGTTATACTCACACAAAGAGGAAGCAGCTACTGCATGTGGTATTTGTTTAAGAGTATGTTCAGATAATGTTAGTCTTCTTGAACATGTTGACAGTTGCCATCCAAGGGACTCTTTAGCATCTGATCAGAGACGTTACAGTTGCCAAATATGTGCACGGCAGCATGACTCTAGAAAGAAACTGTTAGCTCATGTTAAAATTCATAACTTACGGGATGTAGAAGGACACTGTGTAGATCCAGAATCAATGGTCATTTTGAATAGTGATTATTATGGTCAAGATTTGCAGCCACCCCCACATATGATGGATGACGATTTACCATTAACATGCGAGATTTGTTATAAATCATTTCCGacagaactgaaattaataaaacataaaCGTACTTCTCACAAAGATTCTGAAAGTCTCCATAGCTTAAACAGCTCAGCCACATATCATTTATACTTTTCGTGTGAATTATGTGGATTATCTCACTCTACAAGAACAGAAAGATGGCGCCATGTATTTAGTTGCCACTCAGATGAATCATCTTTGGTATGTGAACTCCCTGACTGCGGTAAAGTATTTCCAACACGTGCTATGAAAATAGAACATACAAATTCTCATCATGATCTTCAAGGTTCAATGCCTAATACATGCGAGATTTGCGGCAAACTTTGGGCTACTCGTGTAAATTATTGGAAGCATATGATGGGTGTTCATAGCGACTCCTTACCTTTCATTTGTGGCGTGTGTTTAAAGATATTTTGTAATGTGGGGGATTTAGCAGCTCATGTTAAAGGGAAACATTGGCCTTTAGAAGGTGGAGACTTCTGTTGTGATATTTGTGGACGTCCGTATTCTAAGAAATCAAAAATGTCAAGACATCGTAAGATTCATGATCTGCCAGTATCCCAGGGTGGCCTAGCAGAAGGTCAGTTTGATATTAAAGGTAGTGCTGCCAATATGTCTTCAGATTTGTCTGTAGCTTTAAAATGTGAAGAATGTCCTAATGAAGAATTCTTAGATCTGGAAGAACTCTCTGAACATAGAAGGTCAGCTCATAATTTAGTTCCATGTGACTTATGTCCAAAATATTATGGTCGTACATCCCATTTATGGAAACATGTGAACAAAATCCATAAAAACCATCCAGATATTACTTGTAACCTTTGCCTTAGAACATCTGCATCTAGAGCTCATCTTGCCAAACACATTACTAAACATCATCGTTCTGAATCAATAGATCATTTGTCATGGCATGATGAAGTTATTAATGCTATAGGTGGAAGTAATGATTCCATTCATACATGTAGTAAATGTTCTAAGGAATTTAGGAAAGATCATTTAATGAGACAGCATTTCAAACATTGTAAAGGACCACGTACTCCATCAAGTACAAATGTGTCAAATGCACCACATGATAATACTTATCAGTGTGAAAAGTGTTTAAAAATGTTTGAGACTCCAGGGGTTCTTCGAAAGCACATTAAAGTTGCACATATAGTATACCCCTGTGAGTTATGTGAAAATGTTGGTTGTGATTCTAAGACTGAATTGATGGAGCATATAAGGGAAGCTCATAATGGCCATCCTGACCTAACTTGTGATGTTCCGAATTGCTTTAAAATGCTACGTTGTAAAAAAGATATGCATAAGCATAGAAGAGAACATCGTCAAGGTTATCCACCTCCAACATGTGAGTTTTGTGGTGAATTGTTGACAAATAGGATGAAATTGCGTATGCATTTGAAGACCTTCCACACACAGAAGTCAAAGCATATGTGTGCTGTTTGTGTATCATCTCTAAGCAGTTTTGACGATTTGAGAttacatattgaaacaaatcatcCTGCTGTAATAGGAAAACCGAATGTGTGTCCTATTTGTGCGAGAAAATGCCCTACAAAATACAAACTATTTTACCATGTTAAAATTCATGGTAGTGATTTTTTCCCATGTGAAGCATGTGTTCAAGTATTTAATAGTTCTGAAGCATTAAAAGAACACTCTAAAAAGCATCCTCCCAAGAAGAACAGACAGTCAAATATTAAAGTAGAAGTAAAACAAGAAGTGGATAAAACAAATACATTGGAAAGTGAAGCAAATGATAAATCAATGACAAAACTTTCAGAAGGTGAACCACCTCATAAAAAGTTTAAGTCGTCGCATATTTGTGATATTTGCTCACAGACATTTGATTCAAAAGTAGATTTACACAAACATGAAAGAGACAAACATCCGGACTGTATATGTACAAAATGTAATTCACTTCAGATTTCAATGGAATCTCATGTTGTTATCTGTCAGGGTGAAGGTGATAAGCAGTCATCTCTTGTAACAGTTCCAAGAAGTAGTGTACTTGAAAATAGTTTGAGGTCCAATATAAAATCTGAAGTAGAAGATGATGGAGACAGTGGTGAGGATACTTATGAGGTAGATTCATTTTCCTTTGATCAAACAATGAGTAGCATAGATGAAAATTCTTCAAGCTCTAAAGAAGTAAAACCTGTGTTTAAAAGAAAAgtatatgaaaataataaagttCTGAGTACGTGTGAGGTATGTGGTAAAGAGTGGCCATCTAAAAAAACCTTATGGCAACATTTAATACGTTCACATCAGCTAGAAGCTGCCAGAACATGTGGCGTTTGCTTGAAACTTTGTAAGGATTATGAGCATCTTGATTATCATTTGGTAAAAGCTCATCCCAATAATTTTAAAGGGGAAAAGAATACAAATATTTGTTGTGTATGTGGTCGATTCCATAGTGCTCATCTTAAATTAGAGAATCATGCAACATTACATTCAGGACATGAAAAAAGGGCATTAGGTCCATTATATAATTGTAAACATTGCGATGTGGTATACAATTCTCAGCGATATATAGATGAACATGAGTTAGATAAGCATGGTGCTCCACTTGAGAATGATGACTCACAAGATGATATTTTTCTGTGTGATGTTTGTAATAAAACATTTGAAACtaaggatttattagtgaatcatGTGAGTAGTCATAAAGTAGAAGAAGCTTCCATACTTCAAACACCACATAATATTGAGGAACCTAAACTGGGAGAGTCTCATCAGGAGCGTATTACATGCAATGAAAATGAATCGAGTACTGATTTAGGCGAATCAGACAACATGAGAGAAAACAGAGAGGACATCAATGATATACATAATTCAGAAGAAAATGTACGTGAAGATTCTCCTGTTCAGGATGTACAGAATGTTGATGTTAAGGCTGTAAAAGATACAGATGAAGTAGAAAGTAATGAAGAAAATGTGTGCGTAGAAAATGGCATTAATGGAAGTGAAACTGCTCTTGATTTAACAGACAACAGAAATGATCATACGAAGAAAGATGAAAGCATTGGAGGGTGTTACAGAAAAGACTTTATGAATCGTGAATCATCTGATGCAAAAGGTGATGCTAATTCAGGAAGGGAAGAAACATCACAGttaacagaaaatgtaaataacgTACCAAATAATATGACCAGTAGTGATTTTATTTCACGAGATAATGTACAAGAATCTTCAGGAAATGATGATTTTGATAATTTTGTATCACAGAATATATCAGATCAAGAAATGGAAAAATTAGTTGAAGTTTTTAAAAACCAAGCTACAGGGTTAAATGTAAATGACTTTTAG
- Protein Sequence
- MIESAYKNYDFCSLSEFSDFPLPFQCELCNKSYALAKHLWGHVSSTHRGHPRVTCNFCSRIFSTAFNLQEHKKTRHPVETEEESKQVENNSVNSEDCVEIENESQCSIETRKVPTSEEVSGSRRKNSKPRKIERDQNIEDENYDYYSHMSADGRWEDDEQPSSCFICNRVFTNQNALKAHFMSVHDIDQGDLDFGDSMPNKHRIKKENVDENDVAENMLEAETVFCCEVCIREFNDRASLWLHMLYSHKEEAATACGICLRVCSDNVSLLEHVDSCHPRDSLASDQRRYSCQICARQHDSRKKLLAHVKIHNLRDVEGHCVDPESMVILNSDYYGQDLQPPPHMMDDDLPLTCEICYKSFPTELKLIKHKRTSHKDSESLHSLNSSATYHLYFSCELCGLSHSTRTERWRHVFSCHSDESSLVCELPDCGKVFPTRAMKIEHTNSHHDLQGSMPNTCEICGKLWATRVNYWKHMMGVHSDSLPFICGVCLKIFCNVGDLAAHVKGKHWPLEGGDFCCDICGRPYSKKSKMSRHRKIHDLPVSQGGLAEGQFDIKGSAANMSSDLSVALKCEECPNEEFLDLEELSEHRRSAHNLVPCDLCPKYYGRTSHLWKHVNKIHKNHPDITCNLCLRTSASRAHLAKHITKHHRSESIDHLSWHDEVINAIGGSNDSIHTCSKCSKEFRKDHLMRQHFKHCKGPRTPSSTNVSNAPHDNTYQCEKCLKMFETPGVLRKHIKVAHIVYPCELCENVGCDSKTELMEHIREAHNGHPDLTCDVPNCFKMLRCKKDMHKHRREHRQGYPPPTCEFCGELLTNRMKLRMHLKTFHTQKSKHMCAVCVSSLSSFDDLRLHIETNHPAVIGKPNVCPICARKCPTKYKLFYHVKIHGSDFFPCEACVQVFNSSEALKEHSKKHPPKKNRQSNIKVEVKQEVDKTNTLESEANDKSMTKLSEGEPPHKKFKSSHICDICSQTFDSKVDLHKHERDKHPDCICTKCNSLQISMESHVVICQGEGDKQSSLVTVPRSSVLENSLRSNIKSEVEDDGDSGEDTYEVDSFSFDQTMSSIDENSSSSKEVKPVFKRKVYENNKVLSTCEVCGKEWPSKKTLWQHLIRSHQLEAARTCGVCLKLCKDYEHLDYHLVKAHPNNFKGEKNTNICCVCGRFHSAHLKLENHATLHSGHEKRALGPLYNCKHCDVVYNSQRYIDEHELDKHGAPLENDDSQDDIFLCDVCNKTFETKDLLVNHVSSHKVEEASILQTPHNIEEPKLGESHQERITCNENESSTDLGESDNMRENREDINDIHNSEENVREDSPVQDVQNVDVKAVKDTDEVESNEENVCVENGINGSETALDLTDNRNDHTKKDESIGGCYRKDFMNRESSDAKGDANSGREETSQLTENVNNVPNNMTSSDFISRDNVQESSGNDDFDNFVSQNISDQEMEKLVEVFKNQATGLNVNDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -