Msep040513.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- L
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:885458728-885493604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1 1.3e+03 4.1 1.1 13 23 3 13 2 13 0.92 2 23 1.5e-05 0.02 19.3 0.2 1 23 19 41 19 41 0.98 3 23 4.4e-05 0.058 17.8 0.8 1 23 56 79 56 80 0.95 4 23 7.6 1e+04 1.3 0.2 3 23 115 137 113 137 0.77 5 23 0.0047 6.3 11.4 0.2 1 23 177 200 177 200 0.96 6 23 0.19 2.5e+02 6.4 0.6 2 23 214 236 213 236 0.87 7 23 0.018 24 9.6 0.1 3 23 314 334 313 334 0.99 8 23 1.8e-05 0.024 19.0 0.1 2 23 360 381 359 381 0.96 9 23 7.8 1e+04 1.3 0.2 3 23 391 412 389 412 0.80 10 23 0.046 61 8.3 0.3 1 23 417 440 417 440 0.93 11 23 0.68 9.1e+02 4.6 0.1 1 23 447 472 447 472 0.93 12 23 2.4 3.2e+03 2.9 0.2 2 23 554 577 554 578 0.83 13 23 0.00024 0.32 15.5 2.6 2 23 591 612 590 612 0.96 14 23 0.0049 6.5 11.4 0.5 1 23 622 644 622 644 0.98 15 23 0.15 2e+02 6.7 1.5 2 23 652 673 651 673 0.96 16 23 8.9 1.2e+04 1.1 0.1 2 23 693 714 692 714 0.92 17 23 0.00065 0.87 14.1 0.0 2 23 755 777 754 777 0.96 18 23 0.27 3.6e+02 5.9 0.3 1 23 781 803 781 803 0.96 19 23 0.072 96 7.7 0.4 1 23 812 834 812 834 0.96 20 23 0.0036 4.7 11.8 0.1 1 23 842 864 842 864 0.97 21 23 0.12 1.6e+02 7.0 0.9 1 23 871 893 871 893 0.94 22 23 0.00068 0.91 14.1 2.3 2 23 955 976 954 977 0.95 23 23 3.9e-06 0.0052 21.1 0.1 1 23 980 1003 980 1003 0.98
Sequence Information
- Coding Sequence
- ATGTTTAGTGATCATTTAAAGATTCACATGAAAACACACGACAACCAGAAGCCTTTCCAGTGTACTGTCTGCAATCGGGGATACAATACCGCAGCAGCGCTGACATCGCACATGCAGAACCATAAGAAATCTTGCGATGCTCCCAGTCCGTCACCTGGTACCACTTTTAAGTGTTTACAGTGCTCTGAAGTATTTCGCAAGCCCGAAGATCTGCAGGCACATATGGCGAACCAGCATCATGTAGAAAGCACAGGGACACCTCCGACCACACGCTCGCCACGAAACACCCAGTCCAGAATCAAACTGTCGCCTTCGTACCCGACGGCAACGCCTCGCCTCGCTTGTATGTACTGCACCAAAGACAATTTCAGCACCATGGAATCACTGCAGATCCATGTACAAGCCATGCACGGGTCGATTCTAAACGGAGAATTGCATCGTGAAATGTCGCTGTTCAATCAGCACCCTGCCAATTTGATGGCGCAGCACCTGATGCGCTCGTCCCCGACCAGTCATTCCATCCTTCCGTACAGCTGCGAGCTGTGTACCATGCGTTTCGGCAACATGCAGGCACTGCAAAAACACGCAATGTCTGTGCACGGTTTCCGCAGCAGTCCTGGCAAAGACTCCACTTCCCTGTGCTGTGTTCAATGCAACATACAGTTCACTACGCCGGCGCTGTTTGTCGACCATTACGTTTTGTTCCATGGGTCCACGATGGGATTGTTTCCTCCGTCATCAACGCCGACACCCACGCGGCTCACGGAACAGTTAACGCCGACTGATCTCTCTCTGGCGAAGAAGTCGCCTAAACAGAACATTGAAGAAAGACCACCGTCTGCCAAAAGGTACAGACATTCTGCAGAAAACGGCCTTCCTTCGACTGAGTCGCCGAGCACATCCTCCTTAAATAACCATTATGATCCAGGCACACTGCTTTGCAACCAGTGTGGAGCTGCAGTACCCAATTTTGAAGCTTTCCGTACTCATTTGAAGACTCATATTGAAGAAGCAGGGTGTTTGACAGGTCTCCTTGGTGGTTCGTCAGCTTTGGAATCAAGAAAGAGCCCTGTTGTGAGTTGTCCGCAGTGTGGAGCGAATTTCTCAAGTAACGATGACCTAATACAGCACATATCGTCCCATTTTCTCACAACAACTACAGAGTACGGATGCCAGAGTTGTATGAAATTGTTCTTAAAGCCAGACGAACTTCAAAAACACCTCATGGATATACATTCACACCACTTGTACAGATGCGCACTATGCAAAGAAATGTTTGATTCAAAAGTTACTATCCAGGTGCATTTTGCAGTTAAACACAGTAATGAAACAAAGTTATACAGATGCACGGCATGCCCTGCTGTAGCAGTATTCCGTACAGATATGGATTTCAATGTCCATGTTCGAACAGTACACTTGGTGCACCATCTTGTTACTGCCAAACCTACACCAGTCCAAGTACTGAATGGTGGAGATGAGAGAGACCAAATGAGTACTCCTGGTTCTAAGGCTTCAAAAGTCACCTACAAAAATAGTTCATCGTCAAATAACAGTGCTGCTAACAGCAGCCCCGTTCCTGGAAATAGCACAAAGTCAACAGCTTTGGAAAATGGAAAGAAACAAGATacaataaataacaacaataataatactagTGGAACATGTGATATATGTGAGAGAGGGGACTTCTCCAGTGAAGCTGAACTTGTGGCACATAGGAAACTTGTACATCACATTAAATCTACAACTAGTGGTGGAAAGTTAAGCCTCAACTGTGCTTATTGTAATGAAAACTGCAAATCACGGACAGAGCTAGAAAATCACATGAAAACACATTCTCAAGGGTCTGTGTGCACTGGAAAACACAAGTGTAACATATGTGATGAAATGTGTCCATCTGCTGCAGTCCTCGCAGAGCATAAGCTTACTCACTGTAAGGTTATAAGTGGGTCATCTTGTACTCAGTGTAAATCCACAATCAGTAATGAGGATCAATTTTACCAGCATCTCCGCCAACACAGCACCAGCTCGACATCCACAGGCAATAGCTCAAATTCACAGTTACTGTTACCTACTCCTTGTGTGATTTGTCGTCAGACTCTGGTATCCAATGTTGAAGCCAGTATCCATGCACGTTTTCATTTACAGCAATCAGAAACTTCTCAGTGCTGTGTTTGTCTGCAAGGATGTGACAAAAGAGACCTCACTGGTGGTATTTGCAAAGAATGCTATCGTAGACATGGTGGTAAAACATCTCCTACACGCTGTCCAGAATGTCAGCTCAAATTTGAAACTGGATCTGCCTTAGAAGCTCATCTGGCTACTGTTCATAGAAAGACATACCAGTGTATCAAATGTCAGTTAAGCTTTGAGAGTGAACGAGACATTCAAGTGCACGTAACTTCACACTTGCTAACAGAAGGCAGCAATGGACATGAATGCCGATTATGTCTTCGAGTATTATCATCACCACTTCAGCTTCAAACACATCTCATAGAACACACATTTGCAGGCTGTCCTACATTCACTTGTTACATATGCACATCAGTGTTCACAGCAGCTCAAGGATTACAGGCACACATGCTGGAGCATGGCCTAGCTGCTCGCCCATATGATTGTCCCCGTTGTTCACAGAGATTCTTTTTCAGGGCAGAATTAGATAACCATAGTTATGTTCACCTTGAAGAAAATGGAAGTGAAGAAAGAGGAAAGATaccttattataattacaaaagtaAAGGAGATTCATTGGATTCATCACCTCTTTCGAGCAGTAGTGTTCTAGACATTGGTTCTTCAGACAATGGAAATATTAGTCGAATAAAACTAAAGCTTCGCTCTGAAAAGAACAGTCTAGGTCTGAAATGCTCTGAATGTAACCAAGAATTTGGCAGTGCATCAGTACTCCATACACACATACGTAGCCATCACAAGCCTTATAACTGTCCAGAATGTGACAAGGAATTTACTCAAGCAAACGGTTTAAGTGTACACCTACAGACACAACATGGGATAGACACTAGTGTGAACAGTAACTGTCTGACAGAAATTAAACTGGAAGTTAAAGAAGAAAAGAATGAAGACTATGATGAAGATGAAGAACAAATTGATGTTGGTAACAACCAAACTAATGAAACTGTAGAAGAATTAGTTAATTTTGAGAATGAAATATCAGCAGCAGCTGAGGAATCAGATGAACAGAATATTAAAGAAAACAACCAAGAAAATTAG
- Protein Sequence
- MFSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKSCDAPSPSPGTTFKCLQCSEVFRKPEDLQAHMANQHHVESTGTPPTTRSPRNTQSRIKLSPSYPTATPRLACMYCTKDNFSTMESLQIHVQAMHGSILNGELHREMSLFNQHPANLMAQHLMRSSPTSHSILPYSCELCTMRFGNMQALQKHAMSVHGFRSSPGKDSTSLCCVQCNIQFTTPALFVDHYVLFHGSTMGLFPPSSTPTPTRLTEQLTPTDLSLAKKSPKQNIEERPPSAKRYRHSAENGLPSTESPSTSSLNNHYDPGTLLCNQCGAAVPNFEAFRTHLKTHIEEAGCLTGLLGGSSALESRKSPVVSCPQCGANFSSNDDLIQHISSHFLTTTTEYGCQSCMKLFLKPDELQKHLMDIHSHHLYRCALCKEMFDSKVTIQVHFAVKHSNETKLYRCTACPAVAVFRTDMDFNVHVRTVHLVHHLVTAKPTPVQVLNGGDERDQMSTPGSKASKVTYKNSSSSNNSAANSSPVPGNSTKSTALENGKKQDTINNNNNNTSGTCDICERGDFSSEAELVAHRKLVHHIKSTTSGGKLSLNCAYCNENCKSRTELENHMKTHSQGSVCTGKHKCNICDEMCPSAAVLAEHKLTHCKVISGSSCTQCKSTISNEDQFYQHLRQHSTSSTSTGNSSNSQLLLPTPCVICRQTLVSNVEASIHARFHLQQSETSQCCVCLQGCDKRDLTGGICKECYRRHGGKTSPTRCPECQLKFETGSALEAHLATVHRKTYQCIKCQLSFESERDIQVHVTSHLLTEGSNGHECRLCLRVLSSPLQLQTHLIEHTFAGCPTFTCYICTSVFTAAQGLQAHMLEHGLAARPYDCPRCSQRFFFRAELDNHSYVHLEENGSEERGKIPYYNYKSKGDSLDSSPLSSSSVLDIGSSDNGNISRIKLKLRSEKNSLGLKCSECNQEFGSASVLHTHIRSHHKPYNCPECDKEFTQANGLSVHLQTQHGIDTSVNSNCLTEIKLEVKEEKNEDYDEDEEQIDVGNNQTNETVEELVNFENEISAAAEESDEQNIKENNQEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -