Msep139785.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068370.1:133535766-133542043[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 4.1e+02 5.7 1.5 3 23 147 167 144 167 0.89 2 11 0.00052 0.7 14.4 0.2 1 23 196 218 196 218 0.92 3 11 0.0089 12 10.6 0.4 2 23 225 246 224 246 0.96 4 11 0.00049 0.65 14.5 0.1 2 23 253 275 252 275 0.94 5 11 0.0012 1.5 13.4 0.1 3 23 283 304 281 304 0.92 6 11 1.8e-07 0.00024 25.3 1.6 1 23 309 332 309 332 0.97 7 11 0.002 2.6 12.6 1.4 1 23 344 366 344 366 0.97 8 11 1.4e-05 0.019 19.4 0.4 1 23 371 393 371 393 0.98 9 11 1.7e-07 0.00023 25.4 0.6 1 23 398 420 398 420 0.97 10 11 2.2e-06 0.0029 21.9 2.8 1 23 426 448 426 448 0.99 11 11 0.0098 13 10.4 0.2 1 20 454 473 454 475 0.95
Sequence Information
- Coding Sequence
- atgtgttcatgttcctctagctCAGGTGGTACACAGTTGTCTGCCTCAACATTCTTAGAAAGAAGGGCTCCAAAGTTCTTGTGCCACCTTtcgaggatcttccccttttctACATTGCTTGACCAGCATAATGAAGGAATCTTGAAAAGAAGTGATGCAGACCAACACAGTGTGGTAAATACTAATAATGTTCAAAGTGCACTGTCGCCACAAAAATTAGTTTGTAAGTTAGTCACACAAGGACTGGCAATTGTGAGTTCATACAGCATCAGCAAAACCGCTGAAGACACTTCAAAAATTACTAGTAGGGAAAATGATTTGAACACTTTCAAGACTAACACAGGGAATGAGACCATACCAAACAGTATTGTTGTTAACAATTATGATGATGgcggtgataatgatgatgacgaaagTGGTGTCGCTGATTGCTTAGTTTGCATCATCTGTGACAAACTTTTCCACGATGGTAAAAGTCTAGAGAAGCATGTTGAAAATCACAGACAGAACTTATGTTTGTTATGTTTTGCAACGCATCAAACAAAGGAATCATTAAATATACATTTGAAACAAGTTCATTCTGAATTTGTGTGTTTGACTTGTCAGAAAGTTTTTGAAAACAAAATTGATTTGCAGTTGCATTGGGTTGACCATGTGTATGAACGCCCATTGTCTTGTGAGTTGTGTGATCAAGCATTTTTGAAGTTGTCAAGCTTGAAACAGCATAAATTGGTTCACACGCAAATTGAAACTTTAATGTGCGAGGAGTGCGGAGAGCCGTTCACAGATGAACTAGTTCTAAAAAAGCATCAGAATGAGCAGCACGGAACTTTGAGGCTTGTAAATTGTCCAGATTGTGATGACACATTTCCAGATAATGAGAGTCTGCAAACTCATAAAGTCAGCCGTCATCCAGAAATGTATCATCCTTGTGATATTTGTAAAAAGTCATTCAGGAATAAAATAACACTAATTTCCCACATGCGAACTGCACACATTGACAAACCTAAACAAAGAAAACGGAAAGAATATGTGTGTGAATTTTGTGGTAAAGTTTATCAGGATTGCATTTCATATATGGAACACAAAAGAGCCCATATTGATGCAGAATTTACATGTGATGTTTGTGGTGAAAAATTTGACAGAAGGAGAAGTTTAGCGTGGCATAAACTATCACATGCTGACAAGGCATTTGTATGTCAGATTTGTGACAAAGTGTTCAGAACAAAGGTTTATTTAAACAGACACCAAGTTATCCATTCAGGAGAACGGCCATTCAAGTGTACATTTTGTGATAAGGAATATTCAAGAAAGCAGACTTTAAATTCCCACTTAAGGGTGCACAGTAAGGAAAAACTGTTTGTATGCAGTAAGTGTGGTAACGGCTTCCGGTATAAAGTGTCATATGACCAACACATTGTAAACTGTAATATGTCAAAATCGTCAAATAAAATTGAGGAATcagttaaaaatgaattgtgtgaaATTGAAGATTTGATAAAAAATTGA
- Protein Sequence
- MCSCSSSSGGTQLSASTFLERRAPKFLCHLSRIFPFSTLLDQHNEGILKRSDADQHSVVNTNNVQSALSPQKLVCKLVTQGLAIVSSYSISKTAEDTSKITSRENDLNTFKTNTGNETIPNSIVVNNYDDGGDNDDDESGVADCLVCIICDKLFHDGKSLEKHVENHRQNLCLLCFATHQTKESLNIHLKQVHSEFVCLTCQKVFENKIDLQLHWVDHVYERPLSCELCDQAFLKLSSLKQHKLVHTQIETLMCEECGEPFTDELVLKKHQNEQHGTLRLVNCPDCDDTFPDNESLQTHKVSRHPEMYHPCDICKKSFRNKITLISHMRTAHIDKPKQRKRKEYVCEFCGKVYQDCISYMEHKRAHIDAEFTCDVCGEKFDRRRSLAWHKLSHADKAFVCQICDKVFRTKVYLNRHQVIHSGERPFKCTFCDKEYSRKQTLNSHLRVHSKEKLFVCSKCGNGFRYKVSYDQHIVNCNMSKSSNKIEESVKNELCEIEDLIKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -