Msep029643.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:662345581-662358429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00035 0.46 15.0 5.5 1 23 181 203 181 203 0.97 2 10 0.00013 0.17 16.4 3.8 1 23 209 231 209 231 0.96 3 10 1.4e-05 0.018 19.4 5.4 1 23 237 259 237 259 0.99 4 10 8.2e-07 0.0011 23.3 2.1 1 23 265 287 265 287 0.97 5 10 2.9e-05 0.039 18.4 1.5 1 23 293 315 293 315 0.96 6 10 1.9e-05 0.025 19.0 0.0 1 23 321 343 321 343 0.97 7 10 0.0088 12 10.6 0.1 3 22 350 369 349 369 0.95 8 10 0.00012 0.16 16.4 0.1 2 23 401 422 400 422 0.97 9 10 0.00012 0.15 16.5 5.8 1 23 456 478 456 478 0.96 10 10 2.5e-05 0.034 18.6 4.4 1 23 488 510 488 510 0.97
Sequence Information
- Coding Sequence
- ATGTTAAGATGTGATCTGGAACGTTCTGCTTTAGTCTCAATCAAATTAGTATCAGATAATCTCTGCGAAAGACTAAAGTTAGACTGTTTTAATGCTGAAGATTGCTCACATAATCCAGCTTATTCAATATATGAAAAGCCAGAAGATTTAAGACGTGAAACATTGAGTGTAGTGAAGAAGGAAGCGCATACGTGTAAAAGTTCCATGGAAACATGTCGCAAAGGGAAATCTGACACCGCGTCAGCCTCTGATGAAAGTCCTGTTCTTGCGTATGGTTCTGAATTCAAAGAGGCGGATTTAACAATGAACAACAATTTGATGTTTCGTAGTATGTTTTTTATGAATGATGATGCCAGACATTTCCTTGCTCCTCCTTTGCCCCTTCCACCGTGTGAATCAGAATATTTTCAGAAGAAAATAACAGCTTCATCCAGTGCTTTATCAAGTAATAATATTGGTTCACAGAGTAATTCTGGAACAGTCAATCAAGTGCAAAGTGGTTCTGTGGAAAAGTCCATATCAGTACCAAAACAGCGACCACATAACTGTGAAGAGTGTGGGAAAACGTTTCTGATGAAGCATCATTTAGTAACACACATGCGTGTCCACACTGGTGAACGACCACATGTCTGCCCAGAGTGTGGAAAAAGTTTCGCTTTGAAACACTGTCTCAGCACACACCTACTACTACACAGTGCTGATCGCCCGTACAAGTGTACTGAATGCAATAAGTCATTCACTCTTAAACATCACTTGgtaaGCCATGAGAGAGTTCACAGCAGGGATAGACCTTTTGAATGTCCAGAATGTGGACAGAGATTCCCACAGAAAAGGCATCTGACAACTCATATTAAATTCCATTCTGGAGAGAGGCCTTTCTCATGCCAGGTCTGTGGGGAATCGTTTTCACGAGAAGAACATTTAGTAATGCATTCAAGATTTCATGGTGGACAGAGTCCGTATATATGTCCAGATTGTGGAGCTGGTTTCCCTCGCAAATTTGAACTGGTAAACCACGAACGACAGCACGGTCGTAATCCTGAGTCTTGCCCAGCATGTGGTAAAGAATTTCTTCAAAAAAGGACTTTACTTGTTCATATTCGAACATGTGGGCTTCCACCACCACCTATTACACCTCCAACTCAGTCACCATCACCACCACAGTACAGTGACTCCTCCTCTGGATCAGGACCCAACAAGACTTGCAAGGAGTGCGGTGAAACGTTTGCAAGCGTGGAAGGATTAGCACTACATTTGCGTTTGCATTTTGGGGATCACAGTTTCTTGTCAGACATTTGCAGCCTTGCTGCATCTTTAAAGCAATCAGCAGTGAATGTTGCTGCTGCTATTGCTAGtaaaaaaacacatttttgtaCTGATTGTGGACGTGGTTTTACTCAGAAACATGGGTTGTTCCAACATAGACAGAGACATGCAGATGCAAGCTGTAAGCTGAAACCATTTGCTTGTGAAAAATGTGGGAAATGTTTTGCACAAAAAAACCATTTGTCTCTACATGAAAGGCAACATATGGATTTGCCTTCCAATAGAAGTAGCCCAAGCATATCTTTATTTAGATTGAGCCAATCTAATAGGCAAGATTCTATTATACAAACAAGTCCAGAACAACAGCAGCGACAGCAGCATGATCAGATGATGAGACAAGTGGAAGATAGGCATATGGAACATCGGCAGTCAGATCGTCAGAATCCAGATAACATGGCAAGGCAGCCAAACGATCATCAGCATCGTTCAGACCCTATGAATTCAACAGATAGACAGCATGCTGAGAGTCTTTTACATCAGAAGCATGCTGATTCACTAAATGCAGCTGTTGAAAGACACAGACTAGAAAGGCAACATGCAGAAGCAATGATTCGCCACCACCAAGAGGCTGAATCATTAAACACACCTCCACCGGATAGGCATATTGATCATAGAATATTGCCAGTACCACTTATACGTCAAATGCAACCATTAACACTTTCCCGTCAGGGTGATCCACACATGGAGGCACAGAAATTGCTGCATCATCATTTGAATCCATCACCTCCGTTAGATGTGTCTACTCAAGCTTCAGCATCTTCTTCGTCATCTCCAGCATCTTCTTCATCATGTCAGCATGCACTTCCACCAAAACAAGCATATTAG
- Protein Sequence
- MLRCDLERSALVSIKLVSDNLCERLKLDCFNAEDCSHNPAYSIYEKPEDLRRETLSVVKKEAHTCKSSMETCRKGKSDTASASDESPVLAYGSEFKEADLTMNNNLMFRSMFFMNDDARHFLAPPLPLPPCESEYFQKKITASSSALSSNNIGSQSNSGTVNQVQSGSVEKSISVPKQRPHNCEECGKTFLMKHHLVTHMRVHTGERPHVCPECGKSFALKHCLSTHLLLHSADRPYKCTECNKSFTLKHHLVSHERVHSRDRPFECPECGQRFPQKRHLTTHIKFHSGERPFSCQVCGESFSREEHLVMHSRFHGGQSPYICPDCGAGFPRKFELVNHERQHGRNPESCPACGKEFLQKRTLLVHIRTCGLPPPPITPPTQSPSPPQYSDSSSGSGPNKTCKECGETFASVEGLALHLRLHFGDHSFLSDICSLAASLKQSAVNVAAAIASKKTHFCTDCGRGFTQKHGLFQHRQRHADASCKLKPFACEKCGKCFAQKNHLSLHERQHMDLPSNRSSPSISLFRLSQSNRQDSIIQTSPEQQQRQQHDQMMRQVEDRHMEHRQSDRQNPDNMARQPNDHQHRSDPMNSTDRQHAESLLHQKHADSLNAAVERHRLERQHAEAMIRHHQEAESLNTPPPDRHIDHRILPVPLIRQMQPLTLSRQGDPHMEAQKLLHHHLNPSPPLDVSTQASASSSSSPASSSSCQHALPPKQAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -