Msep012523.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- ECU06_1150_1
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:278137512-278139386[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.1e-05 0.068 17.6 0.4 3 23 49 69 48 69 0.95 2 14 0.0024 3.2 12.3 2.3 2 23 76 97 75 97 0.96 3 14 0.007 9.3 10.9 2.5 1 23 116 139 116 139 0.95 4 14 0.0013 1.7 13.2 2.1 1 23 152 175 152 175 0.88 5 14 9.7e-07 0.0013 23.0 2.0 2 23 197 219 197 219 0.96 6 14 0.002 2.7 12.6 5.6 1 23 325 348 325 348 0.97 7 14 1.7e-05 0.023 19.1 1.3 1 23 371 394 371 394 0.96 8 14 0.049 65 8.2 1.3 1 23 428 450 428 450 0.97 9 14 1.2e-05 0.016 19.6 4.3 1 21 456 476 456 479 0.96 10 14 3.9e-05 0.052 18.0 0.6 1 23 485 507 485 507 0.99 11 14 1.1e-05 0.014 19.8 0.5 1 23 513 535 513 535 0.98 12 14 6.8e-06 0.009 20.4 7.0 1 23 541 563 541 563 0.98 13 14 0.00024 0.32 15.5 0.9 1 23 569 591 569 591 0.96 14 14 2.7e-05 0.035 18.5 6.7 1 23 597 619 597 620 0.94
Sequence Information
- Coding Sequence
- ATGGTAGACACTTTGTTTTCCAGGTGCCCCTCATCTGTCACAACATTCAAGGCTTATCACCAATCTCAGATAGCTCTCAGGAATCAACAGGCTGAAGTACACCTCAACTTTAAGGGTGATTATGTTAATGACGAACCAGTATTTTGTCCATATTGTGGAAAAATGTTTATGTCTCGCAGTGAAATGACCAGTCATGTATCAGAACATAAGCAGCAGTTGTCTTTAAAGTGTGACTTTTGTAACATTACATTCATAAAGAAAACTGAATTTGAAGATCACTTAATGCATCATAACAAAGATGATACATgtttgaagaaaaagaaaaaaaaccatGTTGCAGAAGAATTTGTGTGTAATTTTTGtggttttacatttaataataaaaaagatgAATTAAAACACAAGAGAATCTATCACTTTTTAAGAGATGTAAAACCTGATGCATCTGGAAAGTTCCCTTGTAATGTGTGTGGTAAATCTTTTGCAAGAGCATTTCATATGCAGTTTCATAAAGAGAAACAGCATGGAAACGTAAATGAACCTATAGAAAATGTTAGTTCTGAAGTAGAgaataaaaagttaataaattattgtgatACTTGTAACAAATCATTTACACGAAAGTTTGATTTGAAACGACATATTTTGAAAGCACATGGTTCATCTGAAAACCAAATCTTATCTAATATTAATGTTAGTGAAAATCAAAATGTTGAAGGAATATATAATGAGGTTGAAAATTCTGACATAGTGATGAATGGGGCAGTTACAGATGAATATGCAGCATCTGACAGATCAGTAGAGCAACTGAATGAAATGAAAAAACAAGACAATGGACAAAATCATGATGTTGATAATGAGGATGTGAGTGACAGTTTTTCTGTAAACAGTGAAGAAATAAGCAGACATTTAGATATCCCAATCGCATCAACAGCTCAGTCATTTCCAGAAATTAAATCATATGTGAGAAATCATAAGTGCACGTTATGTAATAATGTTTATACTCGTAAACATGATATGCTTAAACACAGACGAAGTGCACATACATTAGAAGAGCGTAAGAAAGATCCATTCGAAGAAATACTTAAAAGTAGACAGAAAAACACCAGATACGAGTGTAGTGAATGTGGaaattattattcaagaagttCTGATCTGCAGAAACACTTATATAGTAAACATGGGGGTGACAGTTACATTGACCGATCTGTAGGTACTGTTGATGATATGGatgttgaaatattaaataaagctAAAATAGAAATCAATGGAAATATTGTTTACCATTGTGAACAGTGtggaaaaaatattttaacaaaacgaGGTTATGTTCGCCATGTACGTGTTCATACTGGAGAACGGCCATTCACATGCCACATTTGTGGTAAACAGTATAGATCCTCTACAGATCTAACAAGGCATCTGAGATGTGTTCATGATGGTGTTAAAAATTATCAGTGTGATGTATGTGGCCGATATTTTGCTAATAAAGGAACTCGAAATGATCACAGAAGGATTCATACTGGAGAACGACCATATGTCTGCCACACTTGTGGAAAAGCATTTCCAACACCAAATTCTATTTATGTACATAGGAGAATTCATACTGATTATTTTCCTCATCAGTGTACTTCCTGTGATAAAAAATTTCGTAGGCGTCAACAGCTAATTCATCATATTCGGACACATACAGGTGAGAAGCCTCATGCCTGTGATTTGTGTGGCAAACGATTTGGTGTTAAAGAAGAAGTTACTCGCCACAAACTTACTCATTCCAATGAAAAACCTCATGCTTGTTCCATTTGTGGCTTGTGCTTTGGTCAGAAACGATATTTAAAGAATCACATGAAAACTCATCACTGCCGTCTTATATGA
- Protein Sequence
- MVDTLFSRCPSSVTTFKAYHQSQIALRNQQAEVHLNFKGDYVNDEPVFCPYCGKMFMSRSEMTSHVSEHKQQLSLKCDFCNITFIKKTEFEDHLMHHNKDDTCLKKKKKNHVAEEFVCNFCGFTFNNKKDELKHKRIYHFLRDVKPDASGKFPCNVCGKSFARAFHMQFHKEKQHGNVNEPIENVSSEVENKKLINYCDTCNKSFTRKFDLKRHILKAHGSSENQILSNINVSENQNVEGIYNEVENSDIVMNGAVTDEYAASDRSVEQLNEMKKQDNGQNHDVDNEDVSDSFSVNSEEISRHLDIPIASTAQSFPEIKSYVRNHKCTLCNNVYTRKHDMLKHRRSAHTLEERKKDPFEEILKSRQKNTRYECSECGNYYSRSSDLQKHLYSKHGGDSYIDRSVGTVDDMDVEILNKAKIEINGNIVYHCEQCGKNILTKRGYVRHVRVHTGERPFTCHICGKQYRSSTDLTRHLRCVHDGVKNYQCDVCGRYFANKGTRNDHRRIHTGERPYVCHTCGKAFPTPNSIYVHRRIHTDYFPHQCTSCDKKFRRRQQLIHHIRTHTGEKPHACDLCGKRFGVKEEVTRHKLTHSNEKPHACSICGLCFGQKRYLKNHMKTHHCRLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -