Msep149878.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068370.1:364239375-364242953[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.4e-06 0.0059 21.0 0.3 2 23 72 93 71 93 0.96 2 10 2.7e-07 0.00036 24.8 0.7 1 23 99 122 99 122 0.97 3 10 3.3e-06 0.0044 21.4 0.5 1 23 128 151 128 151 0.97 4 10 0.00058 0.77 14.3 0.5 2 23 160 182 159 182 0.95 5 10 0.00043 0.57 14.7 2.9 1 23 187 209 187 209 0.96 6 10 6e-06 0.0079 20.5 0.9 1 23 217 240 217 240 0.98 7 10 1.7e-07 0.00023 25.4 0.5 1 23 245 267 245 267 0.98 8 10 3.1e-06 0.0041 21.4 0.1 1 23 273 295 273 295 0.99 9 10 6e-06 0.008 20.5 4.8 1 23 301 323 301 323 0.98 10 10 0.00016 0.21 16.1 1.3 1 23 329 351 329 351 0.97
Sequence Information
- Coding Sequence
- ATGGCACCTGCACAAGGAGAAGCAGAAGATAGAGACGTTGTTGAGCCTGTGGTTTCTACCAGTATGTCGCAGGAAAGTGAAGATGATGATTCTCTTCATCAAGATATGTTGGAGGAATATGGAGCAAAGTGTCAAGTCAAAAAACAAGAAGATGCATGCCATAATGTTCTCCAAAAAAGAGATGATGAAATGGAAACGACTGACAACCTAATAGAATGCAACGTATGtggtagaatttttaaaaatagGTTCTGGTATGAAAAACATATGCAAGGACATAGAGAAAATAAACGCTTTGTATGTGATCTGTGTGGAAAGTCTTTTAAACTCAATTCAACTCTGCGAAGCCATCAAAGAGAAATTCATTCAGCCGAGAAAAAGTTCTCTTGTCCAGACTGTGGTTATGCAACAAACAACAAAACTAACTTTGAATCTCATATAAAAATCAAACATACGGATGTTAATGTGCATGGTATCAAGTGTGAGCTATGTGATACAAGATATTTTCGTGAAGAAGACCTCATGAGGCATAAGATAAAAGAGCACAATGCACCAAGATTTAAGTGTAATTTTTGTGAAAGATCATACACTTCAAAACAGTATTTACATATACATGAAGCAATACATAAACCAAATTTTAGGCTAGAATACCAATGTGTCACTTGTGGCAAAATGTTTCCAAATGTGGGCCACCTGAGTTCACACGTCAGGAGCCGTCATTTAGGACTCTCGTATGAGTGCAAAGAGTGTGGCAAAAGAGTGTCTAGTCGATCGTCATTACGAGACCATATGAGTATTCACACAGGAATAAAACCTTATGTGTGTGATGTCTGTGGAAAGGCTTTTGGCGCCAGTAAGTATCTCAGAATACACCTTCGTTCACATACTGGTGAGAAACCATATTCTTGTCAACATTGCCACAAAGCATTTAGTCAGCGGGGCAGCCTTACTATACATGAACGTTACCATTCTGGTGATAGACCATTTCACTGCCTGCTATGCAGTAAAGGATTTGTTGCGAATTCTCTTCTTAAAAATCACATGAAAGCTCATAAGAGTGCATGA
- Protein Sequence
- MAPAQGEAEDRDVVEPVVSTSMSQESEDDDSLHQDMLEEYGAKCQVKKQEDACHNVLQKRDDEMETTDNLIECNVCGRIFKNRFWYEKHMQGHRENKRFVCDLCGKSFKLNSTLRSHQREIHSAEKKFSCPDCGYATNNKTNFESHIKIKHTDVNVHGIKCELCDTRYFREEDLMRHKIKEHNAPRFKCNFCERSYTSKQYLHIHEAIHKPNFRLEYQCVTCGKMFPNVGHLSSHVRSRHLGLSYECKECGKRVSSRSSLRDHMSIHTGIKPYVCDVCGKAFGASKYLRIHLRSHTGEKPYSCQHCHKAFSQRGSLTIHERYHSGDRPFHCLLCSKGFVANSLLKNHMKAHKSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -