Msep053797.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- zfh1
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:1159555905-1159601403[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.2e-05 0.029 18.8 1.7 1 23 57 79 57 79 0.97 2 15 0.0002 0.26 15.8 1.5 3 23 87 107 86 107 0.99 3 15 0.00011 0.14 16.6 0.2 1 23 223 245 223 245 0.98 4 15 0.015 20 9.8 0.1 1 23 251 274 251 274 0.96 5 15 8.7e-06 0.012 20.0 0.8 1 23 295 317 295 317 0.97 6 15 0.00079 1 13.9 0.6 3 23 333 353 331 353 0.95 7 15 0.016 21 9.8 2.7 1 23 358 381 358 381 0.96 8 15 0.0012 1.6 13.3 1.8 2 19 389 406 389 410 0.95 9 15 0.003 4 12.0 2.9 1 23 416 438 416 438 0.96 10 15 0.0034 4.5 11.9 0.2 2 23 444 465 443 465 0.96 11 15 4.1e-06 0.0054 21.1 1.1 1 23 477 499 477 499 0.98 12 15 0.003 4 12.1 0.2 3 23 507 527 505 527 0.97 13 15 6.3e-06 0.0084 20.5 0.2 1 23 533 555 533 556 0.96 14 15 0.004 5.3 11.7 0.8 1 23 567 589 567 589 0.96 15 15 8.3e-06 0.011 20.1 0.1 2 23 882 903 881 903 0.97
Sequence Information
- Coding Sequence
- ATGCCGCAGCGTTGCCAGTTTTTGGCCATGAAATGTCGTAAAACATGCCGTAACATATACATAGTGGTTGTAGCAGATGTAAAGCCAAGAACAGAAAGTGGACTGGCAGTTGATGATGTTGAGATACCACTTCCACAAGATCAGGATATTTTATCACAGTTACATCCATATCCTTGTGACTTTTGCAGTAGAAGGTTCAGCAAGAAATCTACTTTGATGAGCCACATGGTATCTCATCAGACAGAACGACCTCATGGTTGTAATTTGTGTGGTGCTCGCTACCGCCGGAAGTGTGATCTTGTTAATCATATGAAAATACATGCATATGCACCACTTCGTGGTACTGTTGAAGAAGAAGAGGATGATTTACCTCATCATTCTCAGTCAAGTGAGGCATCTGCAAAAGGTAGACGCAAGAAGGCACAAAACCTTATTCCCAAGAAGAACAGTTTTGGTTCAACAAGTGATTTGAACTCGGAGAATTATGAttacagagatgacaagaaagctggTAAAAATAAATTAGTAAAGAAAGGTCACAAGAACAATGTTTCAAAACCAACTAATTATATTGATGAAGATATGCGTCTCCTGTCAGAAATGTCTCGAAATGTAGATATAGTAAATCAGGTGCCTAGATGGCCAGTAGTGGATCAAAGCCGACCATATGTCTGTCAGCATTGTGGTGTTGGTTTTGCTAGAGAAAAGGCTTTAGCTTCACATTCAAGAATACATGCTGGGGATTCTCCTTTTGAGTGTGATGTTTGTGGTGAAATGTTTTGGGATGTTGCCATGTTACGTGAGCATTCAAGAAGTAAACATTCACATGTAGACACTACGCCTCCTGATGCATCTTACACTGGAGATGACAGATTTGGAAACTTTTTCTGTGAGACTTGTGGGTTAGCTTTTGATCGACTTGATCTACTGAGAAGACATCGCAGGAGTCATGTGAAAGGAGAACCACTTCAAGATGTTAATGATGATGACCACTTGTGTACTGTGTGTGGTCTCTTCTTTGAAAATGCAGGTGAATTACGAACTCACTCAGAGACTCATGCACGAACTGTTCATCGTTGTATGGCTTGTGGACAGTGTTTTGATGATGCTCCCGCATTATCAGATCATGTGCGGAGATGTCACACTGATAATAATCAAGACAATACATGTGACGTGTGTGGAAAGGCTTGTAAAGATCGCCGTTCGCTGCAAAAACATTCGTGGGTCCATTCTGAAAATCGTAGTTTTCCATGTTATGCTTGCAACAAACGTTTTCATAGTCGAGCTAGGCTGCGCAGACATATGGTATCACATCGTGACAAAGCTGTCACGTGCTCAGATTGTGGTGAAGAGTTCCCAGATGGCCGTGCCCTTCTTAGTCATCGCCATAGTCACAACAATTCTTCTAGTTCACATCCTGCTCGTTCATTCCCTTGCCACGATTGTGGCAAAACATTTGGCTCAAGATCATCACAGCAGATACATGTCCGTATCCATACAGGTGAACGACCATACGGATGTAGATTTTGCTGGAAAGCATTTGCAGATGGTGGAACTTTACGCAAACATGAACGTATACACACTGGGGAGAAGCCATATGTGTGTCCAGTTTGCCCAAAAGCTTTCAATCAGAGGGTTGTATTAAGGGAACACATCCGTGCTCATCACTCAGGTACAGATTCAAAAGTGAATTCCTGTTACCAGTGCAAAGTGTGTGGATTTTTATTTGGCTCTTCAGTTGAATTGTGTCTCCATCTGGTTCAGCATAGTGATGAGAACACTGCAAAACATCGTATGCCAAGTCTTGGACCGCGTAAATATAAAAGAAGACGTAAGCTTCCTACTGTTGATGTAACTCCTATTGCTGTCCTTCCACCACCTCTTCCAGACAATGAGGATTCTACAGACTCCAGTCATTCgcaacaagaaaagaagaaaataatcaCAAAGAAGAAAAGTAAATATGAAAACCAATCAGCTCAAGATTTAGAATCTGTTGTCAAAACCTGTGAATCTGCTCTTGAAAATATTAATTCTATGGTTGGTAAAAGTTCATTTTCAGATCCAAAGAAGCCAAAACTAGataaaagtattaaaaaacatAAAGCAAAAACAACTGGAAAGTTAAATAAACTTGGTAGAAATGAAAAAAGAGGTAGAGGTGCAAAAACTTTAAACAATGCAAGTTATGCTGTCAAATATGCAGTAACACGACCAGATGTTGCTAAATCATTAAGTAAAGTGGATCCACAGCGACCTAGAACCAAAAATGTTACATATCCAGTGGTTGAAGAAAATATGGAAACCGTAGCAAATGGTTCTGATGGGGTAAGAAACAGACCACGAACAAAAAATGTAAATTACCACAACATGAAGGTAACTAAATTGGAACCTGCAACATTTCCAACAAGTAATGCACGTAGTAAAAAGACAAGGATGAAAAGAAATAAGGGTAAATCAAATGTTATTAATGGATCAAAATCTAGAGTAGAActagaaaataaagaagctgataGTTCTGTAGTTGAAGAAAAGCTTGAAACATCCATTGTACCTGATTTTAATATTGAAGGAGTCAAGCAGGAAATAGCAACAGATGCGGCCATTCAAATGGAAGCAGTTACAATTAAAACTGAAGCTGTCACTTGTGAAATGTGCAGTGAAGTGTTTGCTGATCGTAGTGAACTTTTAAATCATATTAGAATACACATATAG
- Protein Sequence
- MPQRCQFLAMKCRKTCRNIYIVVVADVKPRTESGLAVDDVEIPLPQDQDILSQLHPYPCDFCSRRFSKKSTLMSHMVSHQTERPHGCNLCGARYRRKCDLVNHMKIHAYAPLRGTVEEEEDDLPHHSQSSEASAKGRRKKAQNLIPKKNSFGSTSDLNSENYDYRDDKKAGKNKLVKKGHKNNVSKPTNYIDEDMRLLSEMSRNVDIVNQVPRWPVVDQSRPYVCQHCGVGFAREKALASHSRIHAGDSPFECDVCGEMFWDVAMLREHSRSKHSHVDTTPPDASYTGDDRFGNFFCETCGLAFDRLDLLRRHRRSHVKGEPLQDVNDDDHLCTVCGLFFENAGELRTHSETHARTVHRCMACGQCFDDAPALSDHVRRCHTDNNQDNTCDVCGKACKDRRSLQKHSWVHSENRSFPCYACNKRFHSRARLRRHMVSHRDKAVTCSDCGEEFPDGRALLSHRHSHNNSSSSHPARSFPCHDCGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCPVCPKAFNQRVVLREHIRAHHSGTDSKVNSCYQCKVCGFLFGSSVELCLHLVQHSDENTAKHRMPSLGPRKYKRRRKLPTVDVTPIAVLPPPLPDNEDSTDSSHSQQEKKKIITKKKSKYENQSAQDLESVVKTCESALENINSMVGKSSFSDPKKPKLDKSIKKHKAKTTGKLNKLGRNEKRGRGAKTLNNASYAVKYAVTRPDVAKSLSKVDPQRPRTKNVTYPVVEENMETVANGSDGVRNRPRTKNVNYHNMKVTKLEPATFPTSNARSKKTRMKRNKGKSNVINGSKSRVELENKEADSSVVEEKLETSIVPDFNIEGVKQEIATDAAIQMEAVTIKTEAVTCEMCSEVFADRSELLNHIRIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -