Msep023514.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- ken
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:523970607-523972408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.7e-05 0.076 17.5 1.6 2 23 168 189 168 189 0.96 2 12 1.4e-07 0.00018 25.7 2.9 1 23 194 216 194 216 0.99 3 12 2.7e-06 0.0036 21.6 0.1 1 23 222 245 222 245 0.96 4 12 6.6e-06 0.0087 20.4 2.9 1 23 251 273 251 273 0.97 5 12 3e-07 0.0004 24.6 2.3 1 23 279 301 279 301 0.96 6 12 1.2e-07 0.00016 25.9 0.6 1 23 307 329 307 330 0.95 7 12 0.004 5.3 11.7 0.6 2 23 337 359 336 359 0.95 8 12 4.5e-05 0.06 17.8 0.5 3 20 368 385 366 388 0.92 9 12 0.00026 0.34 15.4 0.4 2 23 395 417 394 417 0.96 10 12 0.00025 0.34 15.4 3.1 1 23 423 445 423 445 0.95 11 12 1.8e-07 0.00024 25.3 0.6 1 23 451 473 451 473 0.98 12 12 1.6 2.1e+03 3.5 1.9 1 11 479 489 479 500 0.83
Sequence Information
- Coding Sequence
- ATGAATTTGACCTCTATGAGACGAATTACTCATgtgTCTGTGATAGAAAACAACTTAGATGAAGATAGCAAGCTGATAGAAGAAACTGATAAAAATACCTTCAAAACTGATAATGAAGAAGTGAATGAGAAGCCTGCAAGTTCTTCAGACTCATTTGTTAAGTTCCAGGATAATGCAGATATTAATTTTAGAGAAGATCCTAGTTTTGTAGATTCTGAAATAAAGAAAGATCTGAGACTAAGAAGTGACAAACCTTCAGAAAACAGTCAAATTAATAGTATTTTTGAAAGGGCAGATAGTCTGGATATTGAAGGTGGGTCGTTAATAGGCAAAATGAAGGAGATACTTAATATTGTAAATCTGAATGAAAAtaaggaggaagaggaagaagacaaCATTTTAGAAGAGGTAGCTCCAGAGCCTATTAacgaaaatgaaagtgtaaaaccaaCATTGCCTGAACAACTGAAAACATCAAAAACAACTGATGACAAAATTGAATACTGTGAAGAGTGTGATAAGCATTTTGATAAGCCAGTTAGTTTAAAAAAACATAAGTTGGTTCATTCAAGAGAAAAATTTACCTGTAGTTACTGTAATAAAAGTTTTCGTCAAAGTTGGTATCTTCAATCACATGTTCGAACTCACACAGGTGAACGACCATTTGCTTGTACCGTGTGTCCTAAAACATTTACTGATAAAGGGGCAATGAATGCTCATGTCCGTGTTACACATTTCACTGAAAAAACTCATGTTTGTACATATTGTAATAAAGCCTTTAAACTGAGAAAACAGTTAGAAAGGCATGAGCGTATACATACTGGACATCAGTATCATCGCTGTGAAATATGTGGTAAATTTTATACGCAGAAAAGTAATCTAATGAAACATTTGATTTTGCATTCTGGTGAAAAGCCATTTGCATGCCCAATATGTGAAAAACGTTTTGctcaaaaagacaatttaaatattcACATTTTAAGACATCATTCACAACAAAATCCAATTGTTTGTGATGCTTGTGGAaagctttttaaaaacaaaatgacatTGATGGGACATAAAAAAAGTAAGCATTCTGATAATGCAAAACAAATTATATGTGAAGTTTGTGGAAAATTTTTCCCAGACAGAAGCTGTTTAAATTCTCACATGTGGGTACACAATGCTGGAGCGCCAGTCCAGTGTGATCAGTGTGGTAAAAGTTATCCACATGAAAGAGCTGTTCGAGTTCATAAAAGAATTGTGCATACAGAAGTTAGAAAATATTGCTGTGACGTCTGTGGAATTGGTTTCAAAACAAGTCAGACTCTGAAACATCACAAAGTTGTTCACACAGGGGAACGGGCATTCAGCTGCGAAGAATGTGGACGTTCATTTGGACAAAAAACAGCTTTAAAAACACATCAAAGAATTCATTCTGGTATAGAGCCTTACTCATGTGTCAGATGTGGTGAATCTTTTAAGTGGAAACAAACTTGTGATAAACACATGACAAAGTGTATGGGAAAGAGAAGGGAACCTCAGCCATTTTTGCTGGGTCACCCAAGTGTATGA
- Protein Sequence
- MNLTSMRRITHVSVIENNLDEDSKLIEETDKNTFKTDNEEVNEKPASSSDSFVKFQDNADINFREDPSFVDSEIKKDLRLRSDKPSENSQINSIFERADSLDIEGGSLIGKMKEILNIVNLNENKEEEEEDNILEEVAPEPINENESVKPTLPEQLKTSKTTDDKIEYCEECDKHFDKPVSLKKHKLVHSREKFTCSYCNKSFRQSWYLQSHVRTHTGERPFACTVCPKTFTDKGAMNAHVRVTHFTEKTHVCTYCNKAFKLRKQLERHERIHTGHQYHRCEICGKFYTQKSNLMKHLILHSGEKPFACPICEKRFAQKDNLNIHILRHHSQQNPIVCDACGKLFKNKMTLMGHKKSKHSDNAKQIICEVCGKFFPDRSCLNSHMWVHNAGAPVQCDQCGKSYPHERAVRVHKRIVHTEVRKYCCDVCGIGFKTSQTLKHHKVVHTGERAFSCEECGRSFGQKTALKTHQRIHSGIEPYSCVRCGESFKWKQTCDKHMTKCMGKRREPQPFLLGHPSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -